Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi07g01852 GCTTTATCAAAAAGGAAAAAAGAAAAAGAAAAAAGAAATTGAAGCCATCCCCCCAACAAACCCATAATGGACATTGGACTCTGCCATTCATCTTCATCATCATATCTCAGCTGAAACTTGTTCTTCTTATAAGAAAGCTTCTTTTCCTGACCACAGAGGCTTAGTAAAGGTCATTTCACTGCCAACCCTCCATTGACTAAAGAACAAAGCTCCTTAAAAGCTCGAGAAGAAAAAGCTTCTTTTTGGGTTTCGAAAAAGAGGGAAGGGAATCTTTCAGATTATGTATTATCAACTGGAGAAATTCTCTCATCAGGATTCTCTGGAAGTCTTGGAAGCGGATATTCAGTATGCAAATTCTCTGGCGGCTGCAATCCCCATGGCAAAAGGGGGTGTTTATCTTCAAATGAAGTTGGTTTATAATCACTTGGCTCCCATTGTTTTGTTTTTGCTACAATGGATGGATTGTTCTTGCACTTGCTTGCTTCCAAGATATTTAAACCTCTTCCACATACTTGTGTACAAGGTATATCCAGAGGGAAAACAAAAACGAAATATATCCAGGCATGGAAGGAAGGCAACTATTAGGGACTTCTATGCTATAATATTGCCTTCACTTCAGCGAATCCATGGTAGCTTGGATAAGTTGGACGATTGCAAGGAAGGGCATCACTGGATTGAGATGTCTAGCAAGAAGAGAGGTGATAAAGATGGTAGGCTTATGAACATCGATATGAAACGAGAAGATGAGTGTGGTATTTGCTTGGAGCCCTGTACAAAGATGGTTTTGCCGAATTGCTGTCATTCAATGTGCATCAAATGCTACCGAAATTGGAACACAAGGTCAGAGTCCTGTCCATTTTGTCGTGGCAGCTTAAAGAGAGTCAACTCAGAGGACTTATGGGTGCTCACCTGTAGCGATGATGTGGTTGATGCCGAAACTCTTTCCAAGGAGGACATGTTGCGCTTTCATCGCTATATAAACAGCCTTCCAAAAGACTATCCAGATGCCCTCTTTGTAGTATATTCGGAATATCTAATTTAGTTCAGACTTCAGAGTAAACTGTATAGAGGGAAATCCCAACACAAAATGTAAAGGTCAGAACATATCCTCTCTGCTTCATATAGAATAATTGATCACATGACATGCTTAGTTAGAACTAATAATGAATCAATGTAAGATGCCAATCATCTCCCCATCTCGGATTATGTATCTTATAAACTTGAAAGTGCCTTTTCTAATGCACTAATTGTCAATAAAGATGAATTTGGTTTCTGATGGATTA 1283 39.28 MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGVYLQMKLVYNHLAPIVLFLLQWMDCSCTCLLPRYLNLFHILVYKVYPEGKQKRNISRHGRKATIRDFYAIILPSLQRIHGSLDKLDDCKEGHHWIEMSSKKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHSMCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETLSKEDMLRFHRYINSLPKDYPDALFVVYSEYLI 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 50365743 50367688 - XM_039037297.1 Bhi07g01852 40241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi07g01852 253 PANTHER F21J9.10 5 253 - -
Bhi07g01852 253 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Bhi07g01852 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 206 IPR013083 -
Bhi07g01852 253 SMART ring_2 157 194 IPR001841 -
Bhi07g01852 253 Pfam Ring finger domain 155 195 IPR001841 -
Bhi07g01852 253 PANTHER RING FINGER PROTEIN 41, 151 5 253 - -
Bhi07g01852 253 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Bhi07g01852 253 SUPERFAMILY RING/U-box 148 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi07g01852 - - - csv:101206911 516.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00590 Bhi-Chr4:14096502 Bhi07g01852 Bhi-Chr7:50365743 4.28E-132 dispersed
Bhi07g01852 Bhi-Chr7:50365743 Bhi07g01858 Bhi-Chr7:50494665 2.50E-74 dispersed
Bhi07g01851 Bhi-Chr7:50365743 Bhi07g01852 Bhi-Chr7:50365743 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1116 . . . . . Bpe10g00772 Bma14g01876 . . Cmo18g00712 . Cma18g00725 . Car18g00672 . Cpe09g00564 Cpe01g01588 Bhi07g01852 . . . . . . . . . . . . . . . . . Lsi04g00641 . . Cme10g00618 . . . . . . . . . . . . . Car04g01817 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001225 3 4 0 0 3 1 3 3 3 3 1 2 2 2 3 2 1 2 4 2 3 3 3 3 3 2 3 4 6 2 76