Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g00116 TTCTTCTTTTGAAGCTCCCGGTTCCTCCACCTACCAACACAAAAAAAAAAAAAAACCTCAAAGCCTTCTTTAATGTTCACAACCAGAGAGCTCGGATCGCTCTCCAATGGCACTATCTCTATCCTTACAACTCATCCGATTCCCTCCTCAAGCACTATCCTCATCCTCTCACCATCTTCTCATCTCTGACCTCGGCTCCGTCTCGCGCTTCTTCCGATCTCCATGTCTTTCCTCTTTGGCTCCGTCGCGGAACTTCACGATGAAGTTATCTTCCAGAACCAAGTGTTTCTCCATGTCCACCGAGGAGGAACAGTGGAGTGAATCGGAAGCGTTGGTGTCCGATGTGGACGAAGGGGGAGATCTTGCGGACGATATGGATATTGGTGTTCGGGATGACAGCTCTGTGGCCACTGCTGCTTCCGCGCAGAGGATTTCTTCCTCTTCACCGAGTGATTATCTGTCGCTTGCGATTCGAGAGCAGGTTTATGAGGTGTTAGAGGTTAAAGCTGATGGAACCGTATCTACCAGGAAGGTTAACAGACGGCAACTATTGAAGTCAAGTGATAACCGTTGGATGACAAATAGGCTTCGTCCACGTGATATCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTCCGCGAACATGCTATTTTGCTTAATCTGGGATCGTTGCGAGCAATAGCTATGCAGGATTGTGTCCTCATATTCGATTATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGTGCCAGCAATGCCATTTGAACTCGAGGTTGTTGAAGCTGCATTGCTTTCACGAACTCAGCGTTTGGAGCAGCGACTAATAAAAGTAGAACCTCGTGTTCAAGCTCTGCTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACATTGGTTGAATTAGGTTCCAGGGCAGGGGCTCTCAGACAAATGCTTCTTGATCTTCTGGAGGATCCGCAAGAAATACGACGCATCTGTATTATGGGAAGAAATTGCACGCTTAATAAAAGAAATGATGATGTGGAGTGCTCTCTTCCTTTGGATAAGCAGATTGCTGATGATGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCTGCAAAAGAAATGGAAGATTCAATTGCCGTCAATTTGAGCTCGCGACGACTAGAGGTTAGCAGAGTGGAATTGCTTCTCCAAGTTGGGACATTTTGTGTGGCAGTTGGTGCTTTAATTGCAGGAATATTCGGCATGAACTTACGATCATACCTTGAAGAACACGTGTTTGCCTTCTGGTTAACAACAGCTGGGATAATTGTTGGCGCTGTTGTGGCATTCTTTCTCATGTATTCATATCTCAGAGATAGGAGAATCCTATAGCTAAATACTTGTTCAGGTCATTCAACACTCAATCTTGGAGGGGCTGCTATCCCAGTGATGGGGATGCTAATTGTGAAGGGCCGTGAGCCAATATTGGCACCATCACTCAGCTTGGTTTATGAAACAAAATGAGGAGAAATCTTTGACTTTGCCTCCTATCCTTGAAGCTCTCAAATCATCTCCAATTCAAATGGGGAGAGGGGATTTCCATTTCATCTCAACCGAGTTATTATTATTATTTTTTTGATAAATAATCTGCATCCAAAAATTTCGATTATCTACATTTCTTAAATTCGTTTAATGTATTAGATTGAACTTCAGTGATATCTCTCACTTTGTTTTTATACTTGATTTAGAAATTTAATTGAGTGTATGTTATATACCGTAGCACTCAAAATTAACTGAAACGTTTTTATTAAA 1918 42.54 MALSLSLQLIRFPPQALSSSSHHLLISDLGSVSRFFRSPCLSSLAPSRNFTMKLSSRTKCFSMSTEEEQWSESEALVSDVDEGGDLADDMDIGVRDDSSVATAASAQRISSSSPSDYLSLAIREQVYEVLEVKADGTVSTRKVNRRQLLKSSDNRWMTNRLRPRDIRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGVPAMPFELEVVEAALLSRTQRLEQRLIKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRNDDVECSLPLDKQIADDEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALIAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVVAFFLMYSYLRDRRIL 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4882169 4894819 + XM_039039028.1 Bhi08g00116 40449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g00116 463 Gene3D - 119 210 - -
Bhi08g00116 463 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 399 454 IPR045863 -
Bhi08g00116 463 CDD Mrs2_Mfm1p-like 129 462 IPR039204 -
Bhi08g00116 463 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 42 463 - -
Bhi08g00116 463 Gene3D Magnesium transport protein CorA, transmembrane region 213 394 - -
Bhi08g00116 463 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 42 463 IPR039204 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g00116 K16075 MRS2, MFM1; magnesium transporter - csv:101219314 763.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g00116 Bhi-Chr8:4882169 Bhi01g01583 Bhi-Chr1:32730340 1.33E-19 dispersed
Bhi08g00115 Bhi-Chr8:4882169 Bhi08g00116 Bhi-Chr8:4882169 0 tandem
Bhi08g00116 Bhi-Chr8:4882169 Bhi08g00117 Bhi-Chr8:4882275 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g01453 . 1 447 MRS2 Gene Family AT1G16010 84.6 1.2e-205 713.4
Bhi11g01451 . 1 447 MRS2 Gene Family AT1G16010 84.6 1.2e-205 713.4
Bhi11g01452 . 1 371 MRS2 Gene Family AT1G16010 84.9 3.3e-168 589.0
Bhi04g01155 . 1 377 MRS2 Gene Family AT1G16010 51.9 1.6e-106 384.0
Bhi04g01156 . 1 377 MRS2 Gene Family AT1G16010 51.9 1.6e-106 384.0
Bhi04g01157 . 1 377 MRS2 Gene Family AT1G16010 51.9 1.6e-106 384.0
Bhi12g02261 . 1 366 MRS2 Gene Family AT5G64560 81.5 1.3e-160 563.5
Bhi05g00284 . 1 372 MRS2 Gene Family AT5G64560 69.2 3.1e-130 462.6
Bhi01g01584 . 59 442 MRS2 Gene Family AT3G58970 70.8 1.2e-141 500.7
Bhi01g01583 . 59 442 MRS2 Gene Family AT3G58970 70.8 1.2e-141 500.7
Bhi04g01155 . 3 377 MRS2 Gene Family AT2G03620 68.8 1.3e-137 487.3
Bhi04g01156 . 3 377 MRS2 Gene Family AT2G03620 68.8 1.3e-137 487.3
Bhi04g01157 . 3 377 MRS2 Gene Family AT2G03620 68.8 1.3e-137 487.3
Bhi11g01453 . 13 447 MRS2 Gene Family AT2G03620 53.0 7.2e-112 401.7
Bhi11g01451 . 13 447 MRS2 Gene Family AT2G03620 53.0 7.2e-112 401.7
Bhi11g01452 . 13 371 MRS2 Gene Family AT2G03620 53.4 2.9e-89 326.6
Bhi01g01584 . 59 441 MRS2 Gene Family AT4G28580 50.5 2.3e-91 333.6
Bhi01g01583 . 59 441 MRS2 Gene Family AT4G28580 50.5 2.3e-91 333.6
Bhi12g02261 . 1 328 MRS2 Gene Family AT5G09690 75.9 1.6e-127 453.4
Bhi05g00284 . 1 334 MRS2 Gene Family AT5G09690 64.1 4.1e-107 385.6
Bhi11g01453 . 40 383 MRS2 Gene Family AT5G09690 50.3 8.9e-78 288.1
Bhi11g01451 . 40 383 MRS2 Gene Family AT5G09690 50.3 8.9e-78 288.1
Bhi12g02261 . 23 288 MRS2 Gene Family AT5G09720 68.0 2.1e-89 326.6
Bhi05g00284 . 36 294 MRS2 Gene Family AT5G09720 60.9 3.2e-74 276.2
Bhi11g01453 . 1 447 MRS2 Gene Family AT1G80900 83.4 6.7e-201 697.6
Bhi11g01451 . 1 447 MRS2 Gene Family AT1G80900 83.4 6.7e-201 697.6
Bhi11g01452 . 1 371 MRS2 Gene Family AT1G80900 84.6 4.1e-166 582.0
Bhi04g01155 . 1 377 MRS2 Gene Family AT1G80900 53.4 5.3e-105 379.0
Bhi04g01156 . 1 377 MRS2 Gene Family AT1G80900 53.4 5.3e-105 379.0
Bhi04g01157 . 1 377 MRS2 Gene Family AT1G80900 53.4 5.3e-105 379.0
Bhi08g00117 . 18 455 MRS2 Gene Family AT5G22830 69.5 1.2e-157 553.9
Bhi08g00116 . 18 462 MRS2 Gene Family AT5G22830 68.2 9.8e-155 544.3
Bhi08g00115 . 18 462 MRS2 Gene Family AT5G22830 68.2 9.8e-155 544.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi08g00116 Bhi_Chr08 FPKM 2.280392 3.066398 5.767675 4.520204 7.328568 6.473821 6.433935 0.139977 0.087895 0.0