Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g00576 GCTATTTTCTCGAAATATCTTTTTTAAAAAAAAGGAGTTGATTTTGTTCTTCATTGCTTCCATTTCTTCTTCGTTCTTCGTTTTTCTTGTTCTTGTTTCTTCAATTTTCTTTCGCCGGAAATTTCTCGACTGCGATCGTAACTGACTTTAATTCGTTGCCCTAAACCCTCGGAGAAATTAGGTTTTAATTGTTTGGTTTTGATTGAATCTCGTTCTTGAGTTGAAACAGAGGAACGAGCCCTAGGTTTTGGATTGGAGGATGGGAGAGGAAGTGAAGATGGCGGAATATGAGAGCGGTGGTGGTGACGATGAAAACTGTGCTCATGAGGAGCGAGTATTTGAATGGGAAACGGGTTTGCCTGATGCCGACGATCTCACTCCTCTGTCTCAGACTTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACAGGGCCATGTCGGACACTGATGGATGTTAATCGAGCGTCGCAGAATACGCTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTCTCATCGAATAATTTCAAGTCATTTAACGATGATCGAACTCGGGATCATGATCCGACGGTGGTTGAAGGAGATGAGGCAACGGAGAGGGATGCAGGGTCGGATTCTAGGAAATTGAGGAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGATGGATAATTCGATGGATGATCCATCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACACAAACGGTTTGTGGACGTTGTTGCTCATCTTGGAATTAAGAACGCAGTTCCTAAAACTATTATGCAGTTGATGAACGTGGAAGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAATATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAGGGCCCGTCGTCACCGGACCGGATTTTTGCATCCACGCCTGTACCACAGACCTTGCACGAGTCTACCAACAGTGGGAATGTCAACGGAAATGGCCATTTGCCGGTTCCGACTCCAATGCCGTATGGACCGCCGATGATGCCGATGCCGGTTCTTGGCATGGCAGCGTCTGGTCATGCTCACAGTTATATGGGTATGCCGATCGCTCATCCGGGAAGCGCACAGGGATACCCTGGCTTTGAAACGCATCCTTTCAATATGATGCATCAGAGAGATTGGTCGGGGAACAAATACAGCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAATTCTAATGATAAGTGAATTCCCGCTAATTCTCAGATGTCACTCTGGAAGGAATTTGCTTTCGATAAGGTCTCTGACATAAACAGGGGGCACCCAGATTGATGATACGCAACATGTACCCAAACGTTTCCTATCAATTATATTATTACGTTGTCTATCAGTAAGTCAACAATTGCCAATTATTGAATACCTTTGAGATATTGAAACTGTATCTCCAAGAAGATTGAGATTTTCATTTTCATTCTAGTTTTTGCAATTCACATGCACTTGAATCACAAGCTCTAGTGGATGTACGTACTCTAGTGATGCCTCTCGGTCTCTTGACTAATAATGACTGCTGTGAAACTTGATGATTATACAAGTTCACGGTCTCTCCACTTAAAA 1627 44.74 MGEEVKMAEYESGGGDDENCAHEERVFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRTRDHDPTVVEGDEATERDAGSDSRKLRKVDCTEEADSALRMDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPQTLHESTNSGNVNGNGHLPVPTPMPYGPPMMPMPVLGMAASGHAHSYMGMPIAHPGSAQGYPGFETHPFNMMHQRDWSGNKYSSIVPYPHPHVPPNSNDK 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19099035 19102575 - XM_039039258.1 Bhi08g00576 40909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g00576 333 Gene3D - 151 213 - -
Bhi08g00576 333 MobiDBLite consensus disorder prediction 93 123 - -
Bhi08g00576 333 PANTHER TRANSCRIPTION FACTOR LUX 1 318 - -
Bhi08g00576 333 MobiDBLite consensus disorder prediction 1 20 - -
Bhi08g00576 333 SUPERFAMILY Homeodomain-like 151 211 IPR009057 -
Bhi08g00576 333 MobiDBLite consensus disorder prediction 95 123 - -
Bhi08g00576 333 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 318 IPR044841 GO:0003700|GO:0006355
Bhi08g00576 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 210 IPR017930 -
Bhi08g00576 333 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 155 207 IPR006447 GO:0003677
Bhi08g00576 333 Pfam Myb-like DNA-binding domain 158 206 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g00576 - - - csv:101205712 634.024
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi08g00576 Bhi10g00739 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g00576 Bhi-Chr8:19099035 Bhi09g02983 Bhi-Chr9:77402042 1.26E-26 dispersed
Bhi12g01898 Bhi-Chr12:60731990 Bhi08g00576 Bhi-Chr8:19099035 1.01E-23 dispersed
Bhi03g02516 Bhi-Chr3:60576885 Bhi08g00576 Bhi-Chr8:19099035 5.91E-47 transposed
Bhi11g02825 Bhi-Chr11:75848906 Bhi08g00576 Bhi-Chr8:19099035 8.84E-45 transposed
Bhi10g00739 Bhi-Chr10:15742560 Bhi08g00576 Bhi-Chr8:19099035 1.51E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g486 . . . Bda09g01515 . . . . Cmo13g00108 . Cma01g00619 Cma13g00110 Car01g00563 Car13g00081 Sed14g0045 . Cpe20g00834 Bhi08g00576 Tan01g2411 Cmetu12g0038 . Hepe10g1262 . Lcy11g0162 Cla02g01948 Cam02g2065 Cec02g2102 Cco02g2133 Clacu02g2052 Cmu02g1993 Cre02g2302 Cone3ag0500 Cone10ag0471 . . Lsi02g01341 Csa06g01467 Chy11g01210 Cme11g01332 Blo13g01068 . . . Bpe08g00093 . Bma07g00088 . Sed01g0847 Cmo02g00786 Cmo20g00418 Cma02g00786 . Car02g00565 Car20g00334 . . Bhi10g00739 Tan05g0421 Cmetu11g1564 . Hepe10g1262 . . Cla03g00126 Cam03g0128 Cec03g0127 Cco03g0134 Clacu03g0131 Cmu03g0752 Cre03g0444 . Csa01g02442 Chy12g00223 Cme12g00152
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi09g02029 CCT 1 177 G2-like Transcription Factor Family AT5G42630 60.4 9.3e-42 167.9
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT1G25550 54.3 7.2e-52 201.8
Bhi07g01367 . 19 257 G2-like Transcription Factor Family AT1G25550 55.4 4.7e-51 199.1
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT3G25790 51.4 1.7e-42 170.6
Bhi08g00576 CCT 1 245 G2-like Transcription Factor Family AT3G46640 52.8 1.6e-58 224.2
Bhi11g02825 . 5 185 G2-like Transcription Factor Family AT3G46640 51.3 7.7e-37 152.1
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT5G05090 56.7 2.6e-75 279.6
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT5G05090 53.0 1.2e-67 254.2
Bhi01g00234 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.6e-65 246.1
Bhi01g00235 . 12 310 G2-like Transcription Factor Family AT4G13640 54.9 2.3e-56 216.9
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi06g00890 . 1 229 G2-like Transcription Factor Family AT1G69580 55.9 1.8e-49 194.1
Bhi06g00889 . 1 223 G2-like Transcription Factor Family AT1G69580 56.7 3.1e-49 193.4
Bhi05g01980 . 1 382 G2-like Transcription Factor Family AT1G79430 54.5 1.6e-88 323.9
Bhi05g01982 . 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi05g01981 CCT 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi10g00928 CCT 1 364 G2-like Transcription Factor Family AT1G79430 52.2 5.1e-74 275.8
Bhi01g00234 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 5.3e-39 159.5
Bhi01g00235 . 39 198 G2-like Transcription Factor Family AT1G79430 61.2 2.9e-37 153.7
Bhi03g00736 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g00737 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 1.2e-90 330.9
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT3G10760 57.8 1.2e-80 297.7
Bhi03g02516 . 1 203 G2-like Transcription Factor Family AT2G40970 61.1 1.5e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001910 1 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 3 2 2 2 1 2 2 6 4 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1650 PF00249 Myb_DNA-binding 1.40E-08 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi08g00576 Bhi_Chr08 FPKM 0.0 0.0 0.0 0.0 20.970915 29.188114 0.0 0.0 0.0 0.0