Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g00621 CCTAAAAATATAATAAAACAAAAAGATAAGGAAGAAAGAATGAAAGAGAGAATAAGAGAGCAAAGTTAAACAAAAGCTTCCACACCATAGCTTTAATTCTCTCCCTTCTCTTCCCTCTTCTCTTCATCTTTTCTTTCTTTGCCTTTGCCTTTGCCTTTGCCTTTTTTCCTCTTTTCTTTTGCTTTCTTTTGTGTTTTTGGCTCTGGTATTCCCCAAGTGCATGCGATTCTCCACCTTGGTTTTTCCTAAAGACACATCAAATTTTTTTGCTTTATAAAAAGATATCAATCCCACAACCCCATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCATCAGCAATCCAATCATCATCATCATCATCTTCCTCAGGTAAGCAATAATAATGGATCTCCTCAACACCAACACCAACACCTTCTTTCATTGCCAACTCAACAACTCTCATCTGCACCGTCGTCTCATGTCGGTGGTGTTGGATCGATCCGGCGCGGTTCCATGGCTGACCGAGCTCGGATGGCTAACGTACCACTACCGGAGACAGCGCTCAAGTGTCCTCGATGTGATTCTACCAACACGAAGTTTTGTTACTTTAATAACTATAGTCTCTCTCAGCCTCGCCACTTTTGTAAGAGCTGCCGCCGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTTCCGGTTGGGGGCGGTTGTCGTAGGAATAAGAAGAATAAAACTAGACGATCGAAGTCTCCGGCGGCGACAGCGGCGGTCGGGAATGGAAGTCAAGTGATGAATAACAATTCAAACTCACCCACCACTACTACAGTTTCATTGCACAATAGTGCTGAGAATATTATTGGTCATTTACAGCCTCAACATCCTCATCTTTCATTCATGGCTTCGTTGAATAATTTTTCTCGATACGGAACAACGAGTTTAGGGTTGAATTTTAACGAGATCCAGGCTCAAGCTAACGATATCGGTAACGGTGCCGTTCTGAATCTTCATCCGTGGCGCAGTTCCCAAAACTTTCCTCTGTCAGGTGGCTTAGAAACCCCCTCGGGGTTGTACCCCTTTCAAATTAGCAGCGGCGGCGATGGCGACGACAACAACGCAACAAATTCAATCTTAACACCAAATTCAAGAGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTATTGAAATCATCCAATTTGGGTATCAATAATTCTGAAAACACTCAATTTTGGAGCAATGGAAATGGTTGGACAGATCTTTCAGCAATCAGTTCAACTTCAAGTGGCCATATTTCTTGTGACTTCAATCATTAAAAGCCCCAATTGATCAGATCATCATCTTCAAATTGGCATCTCTCAGCTCACAGCTTTGTAGTAAGTTTCATTTATATATATCAACTTAATTACCAAGGATTTAAATGGTCAAGTGATTTGATGCAAATTTATTAAGCTGATTAAATTAAAAAAAAAAAAAAACTAAAATTAAGCCATCACTTGATCAGTTAAATCTTTTATTAATTAAGCTACTTAGGCTTTATAGAAATTAATCATATATTATAACAAAAAATATCCAGGCACTCATCTAGCTCTCTTCAGCCTCTCTCAAATCTTGATCAACACTCAGAAACTGTTACAACCTTCAAAAAAGATCACATTCTGATCCTCCATGGTAGTTTGTGCTCTTCTCTTTATCTTTCTATTTTATACAAAAAGATTGTGCTTTGTAGAAATATTGTTTTTTTCCCCTTTCAATTTCTTTTTGAGAATGTGTGTGACTATGATTTGGTTATGTTTGTTGGATTTAAATGGAAGAATATGGTTTTTTGTTTGTGTATAAAA 1851 38.95 MDFSSVPIYLDPPPNWHQQSNHHHHHLPQVSNNNGSPQHQHQHLLSLPTQQLSSAPSSHVGGVGSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPAATAAVGNGSQVMNNNSNSPTTTTVSLHNSAENIIGHLQPQHPHLSFMASLNNFSRYGTTSLGLNFNEIQAQANDIGNGAVLNLHPWRSSQNFPLSGGLETPSGLYPFQISSGGDGDDNNATNSILTPNSRATHLPPVKIEETQVLNLLKSSNLGINNSENTQFWSNGNGWTDLSAISSTSSGHISCDFNH 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20475529 20477545 + XM_039039404.1 Bhi08g00621 40954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g00621 341 Pfam Dof domain, zinc finger 86 141 IPR003851 GO:0003677|GO:0006355
Bhi08g00621 341 MobiDBLite consensus disorder prediction 12 71 - -
Bhi08g00621 341 MobiDBLite consensus disorder prediction 259 287 - -
Bhi08g00621 341 MobiDBLite consensus disorder prediction 25 60 - -
Bhi08g00621 341 MobiDBLite consensus disorder prediction 133 173 - -
Bhi08g00621 341 MobiDBLite consensus disorder prediction 259 281 - -
Bhi08g00621 341 ProSitePatterns Zinc finger Dof-type signature. 89 125 IPR003851 GO:0003677|GO:0006355
Bhi08g00621 341 ProSiteProfiles Zinc finger Dof-type profile. 87 141 IPR003851 GO:0003677|GO:0006355
Bhi08g00621 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 333 IPR045174 GO:0003700|GO:0006355
Bhi08g00621 341 MobiDBLite consensus disorder prediction 148 173 - -
Bhi08g00621 341 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 11 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g00621 - - - csv:101218334 573.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00402 Bhi-Chr3:8050040 Bhi08g00621 Bhi-Chr8:20475529 1.68E-36 dispersed
Bhi03g01897 Bhi-Chr3:40387931 Bhi08g00621 Bhi-Chr8:20475529 1.13E-29 dispersed
Bhi08g00621 Bhi-Chr8:20475529 Bhi11g02243 Bhi-Chr11:61405297 9.13E-54 dispersed
Bhi01g03336 Bhi-Chr1:83972145 Bhi08g00621 Bhi-Chr8:20475529 2.50E-15 transposed
Bhi02g00056 Bhi-Chr2:1130090 Bhi08g00621 Bhi-Chr8:20475529 2.45E-33 transposed
Bhi03g01887 Bhi-Chr3:39938822 Bhi08g00621 Bhi-Chr8:20475529 4.74E-32 transposed
Bhi04g01807 Bhi-Chr4:44549561 Bhi08g00621 Bhi-Chr8:20475529 2.51E-32 transposed
Bhi07g00911 Bhi-Chr7:30616198 Bhi08g00621 Bhi-Chr8:20475529 2.08E-69 transposed
Bhi11g00877 Bhi-Chr11:27165976 Bhi08g00621 Bhi-Chr8:20475529 4.46E-35 transposed
Bhi10g00686 Bhi-Chr10:15007072 Bhi08g00621 Bhi-Chr8:20475529 2.67E-66 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g02203 CCT 12 175 C2C2-Dof Transcription Factor Family AT1G29160 59.7 6.0e-44 174.9
Bhi03g00282 CCT 6 160 C2C2-Dof Transcription Factor Family AT1G29160 51.4 3.4e-39 159.1
Bhi08g02203 CCT 12 175 C2C2-Dof Transcription Factor Family AT2G34140 54.1 1.6e-41 166.8
Bhi03g00282 CCT 6 160 C2C2-Dof Transcription Factor Family AT2G34140 50.3 3.6e-38 155.6
Bhi11g02243 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 67.4 4.0e-41 166.4
Bhi07g00911 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 63.8 6.4e-39 159.1
Bhi08g00621 . 1 139 C2C2-Dof Transcription Factor Family AT2G37590 57.0 6.0e-37 152.5
Bhi12g00102 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 80.8 4.0e-44 176.4
Bhi11g02977 . 133 514 C2C2-Dof Transcription Factor Family AT5G39660 50.6 1.6e-80 297.7
Bhi08g00621 . 1 139 C2C2-Dof Transcription Factor Family AT5G02460 57.8 3.1e-40 163.7
Bhi11g02243 . 53 135 C2C2-Dof Transcription Factor Family AT3G55370 80.7 8.7e-37 152.1
Bhi02g00056 . 48 347 C2C2-Dof Transcription Factor Family AT5G60850 53.4 9.1e-48 188.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1652 PF02701 zf-Dof 1.40E-32 No_clan Bhi TF