Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g00789 ATGACAAGGAAGAAGGTGAAACTCGCATACATCACAAATGACACAGCCAGAAAAGCCACATTCAATAAAAGGAAAAAGGGTCTATTGAAGAAGCTGAATGAGCTCACCACTCTGTGTGGGATTGAGGCATGTGCCATAATCTTCAACCCCTTCAATTCCCAACCTGACCTATGGCCCTCCGCCCTGGGCCTCCAGAGGGTTCTCTCTAAGTTTAAAAGCCTACCAGAGATGGAGCAATGCAAGAAGATGGTCAACCAAGAGACCTACCTCTGCGACCGCATTGCCAAGGCCACGGACCAGCTCAAGAAGCTACAGAGGGAGAATCGTGAGAAGGAGATAGCCCGGCTAATGTTTCAGAGCCTCGCTGCTGGAGGGACGCCACCGCCAGATCTCAATGTCATTGATTTGAATGACCTGGGTTGGTTGGTTGATCAAAAAGTGGCTGATGTTGGCAAGAGGATGGAGTTGCTTAGGGTGAACCAATCGATGCGTGCGGCAACAAGGGAGCCGTCGTGGTTCATGGAGATGATGAGTCGAGGAGTTGATGATGAAGACCAAATGAAATTCAATATTGGTGATGATGTGATTCAACTTCCTAGTTTTGGGGAGGATGATAACCATGGTGCTTTTTGGTCAAATAATACCCTTTTCCCTTGA 657 47.95 MTRKKVKLAYITNDTARKATFNKRKKGLLKKLNELTTLCGIEACAIIFNPFNSQPDLWPSALGLQRVLSKFKSLPEMEQCKKMVNQETYLCDRIAKATDQLKKLQRENREKEIARLMFQSLAAGGTPPPDLNVIDLNDLGWLVDQKVADVGKRMELLRVNQSMRAATREPSWFMEMMSRGVDDEDQMKFNIGDDVIQLPSFGEDDNHGAFWSNNTLFP 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26714182 26714838 - XM_039039904.1 Bhi08g00789 41122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g00789 218 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Bhi08g00789 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi08g00789 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi08g00789 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi08g00789 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi08g00789 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 166 - -
Bhi08g00789 218 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bhi08g00789 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Bhi08g00789 218 Coils Coil 94 114 - -
Bhi08g00789 218 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bhi08g00789 218 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 166 - -
Bhi08g00789 218 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00164 Bhi-Chr7:9012917 Bhi08g00789 Bhi-Chr8:26714182 1.15E-70 dispersed
Bhi07g00165 Bhi-Chr7:9031156 Bhi08g00789 Bhi-Chr8:26714182 1.28E-70 dispersed
Bhi08g00789 Bhi-Chr8:26714182 Bhi11g02417 Bhi-Chr11:65811841 2.29E-30 dispersed
Bhi08g00789 Bhi-Chr8:26714182 Bhi08g00790 Bhi-Chr8:26726795 1.06E-132 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1655 PF00319 SRF-TF 2.30E-17 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g00789 - - csv:101219796 369.392