Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g00790 ATGACAAGGAAGAAGGTGAAACTCGCATACATCACAAATGACACAGCCCGAAAAGCCACATTGAAGGAAAGGAAAAAGAGTCTACTGAAGAAGCTGAACGAGCTCACCGCTCTATGTGGGATTGAGGCATGTGCCATAATCTTCAACCCCTTCAATTCCCAACCTGACCTATGGCCATCCATCCTGGGCCTTCAGAGGGTTCTCTCTAAGTTTAAAAGCCTACCAGAGATGGAGCAATGCAAGAAGATGGTCAACCAAGAGACCTACATCTGCGACCGCATTTCCAAGGCCGTGGACCAGCTCAAGAAGCTACAGAGGGAGAATCGTGAGAAAGTGATCGCCCGACTAATGTTTCAGAGTCTCGTCGCTGGAGCGACGCCACCGCCAGATCTCACTATCATTGATTTGAATGACCTGGGTTGGTTGGTTGATCAAAAAGTGGTTGATGTTGGCAAGAGGATGGAGTTGCTTAAGGTGAACCAATCGATGCGTGTGGCGACGATGGAGCCATCATGGTTCATGGAGATGGTGAGTCGAGGAGCTGTTGATGAAGACCAAATGGGATTCAATATTGGTGATGATGTGATTCAAATTCCTAGATTCCTCAGTGTTTATTAG 618 47.41 MTRKKVKLAYITNDTARKATLKERKKSLLKKLNELTALCGIEACAIIFNPFNSQPDLWPSILGLQRVLSKFKSLPEMEQCKKMVNQETYICDRISKAVDQLKKLQRENREKVIARLMFQSLVAGATPPPDLTIIDLNDLGWLVDQKVVDVGKRMELLKVNQSMRVATMEPSWFMEMVSRGAVDEDQMGFNIGDDVIQIPRFLSVY 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26726795 26727412 - XM_039039905.1 Bhi08g00790 41123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g00790 205 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bhi08g00790 205 Coils Coil 94 114 - -
Bhi08g00790 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi08g00790 205 Coils Coil 18 38 - -
Bhi08g00790 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi08g00790 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi08g00790 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi08g00790 205 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bhi08g00790 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Bhi08g00790 205 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Bhi08g00790 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 165 - -
Bhi08g00790 205 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bhi08g00790 205 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g00790 - - - bhj:120083999 397.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g00790 Bhi-Chr8:26726795 Bhi11g02417 Bhi-Chr11:65811841 6.53E-28 dispersed
Bhi08g00789 Bhi-Chr8:26714182 Bhi08g00790 Bhi-Chr8:26726795 1.06E-132 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01150 . 1 233 Type I MADS-box Gene Family AT2G03060 53.2 7.6e-60 228.8
Bhi08g01151 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01149 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01148 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01152 . 1 227 Type I MADS-box Gene Family AT2G03060 53.2 2.7e-57 220.3
Bhi11g01095 . 7 159 Type I MADS-box Gene Family AT2G24840 54.5 1.4e-36 151.0
Bhi11g01095 . 1 165 Type I MADS-box Gene Family AT5G60440 59.5 5.8e-47 185.7
Bhi01g02468 . 1 174 Type I MADS-box Gene Family AT1G77950 58.3 2.5e-51 199.9
Bhi07g00164 . 1 163 Type I MADS-box Gene Family AT5G48670 63.2 6.8e-54 208.8
Bhi07g00165 . 1 163 Type I MADS-box Gene Family AT5G48670 61.3 1.1e-51 201.4
Bhi08g00789 . 1 158 Type I MADS-box Gene Family AT5G48670 57.6 1.4e-46 184.5
Bhi08g00790 . 1 158 Type I MADS-box Gene Family AT5G48670 52.5 7.8e-42 168.7
Bhi08g01150 . 1 233 Type I MADS-box Gene Family AT2G03060 53.2 7.6e-60 228.8
Bhi08g01151 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01149 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01148 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01152 . 1 227 Type I MADS-box Gene Family AT2G03060 53.2 2.7e-57 220.3
Bhi11g01095 . 7 159 Type I MADS-box Gene Family AT2G24840 54.5 1.4e-36 151.0
Bhi11g01095 . 1 165 Type I MADS-box Gene Family AT5G60440 59.5 5.8e-47 185.7
Bhi01g02468 . 1 174 Type I MADS-box Gene Family AT1G77950 58.3 2.5e-51 199.9
Bhi07g00164 . 1 163 Type I MADS-box Gene Family AT5G48670 63.2 6.8e-54 208.8
Bhi07g00165 . 1 163 Type I MADS-box Gene Family AT5G48670 61.3 1.1e-51 201.4
Bhi08g00789 . 1 158 Type I MADS-box Gene Family AT5G48670 57.6 1.4e-46 184.5
Bhi08g00790 . 1 158 Type I MADS-box Gene Family AT5G48670 52.5 7.8e-42 168.7
Bhi08g01150 . 1 233 Type I MADS-box Gene Family AT2G03060 53.2 7.6e-60 228.8
Bhi08g01151 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01149 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01148 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01152 . 1 227 Type I MADS-box Gene Family AT2G03060 53.2 2.7e-57 220.3
Bhi11g01095 . 1 165 Type I MADS-box Gene Family AT5G60440 59.5 5.8e-47 185.7
Bhi07g00164 . 1 163 Type I MADS-box Gene Family AT5G48670 63.2 6.8e-54 208.8
Bhi07g00165 . 1 163 Type I MADS-box Gene Family AT5G48670 61.3 1.1e-51 201.4
Bhi08g00789 . 1 158 Type I MADS-box Gene Family AT5G48670 57.6 1.4e-46 184.5
Bhi08g00790 . 1 158 Type I MADS-box Gene Family AT5G48670 52.5 7.8e-42 168.7
Bhi11g01095 . 7 159 Type I MADS-box Gene Family AT2G24840 54.5 1.4e-36 151.0
Bhi01g02468 . 1 174 Type I MADS-box Gene Family AT1G77950 58.3 2.5e-51 199.9
Bhi08g01150 . 1 233 Type I MADS-box Gene Family AT2G03060 53.2 7.6e-60 228.8
Bhi08g01151 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01149 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01148 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01152 . 1 227 Type I MADS-box Gene Family AT2G03060 53.2 2.7e-57 220.3
Bhi11g01095 . 1 165 Type I MADS-box Gene Family AT5G60440 59.5 5.8e-47 185.7
Bhi07g00164 . 1 163 Type I MADS-box Gene Family AT5G48670 63.2 6.8e-54 208.8
Bhi07g00165 . 1 163 Type I MADS-box Gene Family AT5G48670 61.3 1.1e-51 201.4
Bhi08g00789 . 1 158 Type I MADS-box Gene Family AT5G48670 57.6 1.4e-46 184.5
Bhi08g00790 . 1 158 Type I MADS-box Gene Family AT5G48670 52.5 7.8e-42 168.7
Bhi11g01095 . 7 159 Type I MADS-box Gene Family AT2G24840 54.5 1.4e-36 151.0
Bhi01g02468 . 1 174 Type I MADS-box Gene Family AT1G77950 58.3 2.5e-51 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1656 PF00319 SRF-TF 6.40E-13 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi08g00790 Bhi_Chr08 FPKM 7.215456 7.012765 8.523763 9.938319 5.081977 4.93106 4.082264 1.330729 0.610295 1.547587