Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g00942 TGGATTGGATTGAATCACGAGCCGCATCAAAATTAGCCTCTCAATCGATTCCGAGTTTCTGTTCATGGCTGGTTTCGGTTAAACCGCGTGCTTTTAGCGGGTTTTCTCTTTCTCTTTCTACTTCTCTGATCCTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTACCCCCTTTTTCAGTTTTCATATCAAACAAAAGATCCATTCCTGAAGTCCCAAAGGAATTTACATCCCATTTATTTTTCTTCCTTCCTTATTTACTTCCCTTAATTTCGTCATTTATTTCCACATTATTTGTTCTTATTATACTATTCTATATACTGCGATTTTTCCGTAATTTACTTTAGAGGAGAGAGAAGAAGAATTGCGGTTTCTGTTTCGGTTTCGGTTCAATTCAACCTCACCCCTTTTGAGTTTATAACCTTATTGAGGTTTTCATGACATTGTAGCCGATGGACCAGAATAAATTGGAAGCAGATTCTGAGGCAAAAGGGGATTATTCTTCCAGGAGTAGCAATAAAAGTAACCAGACTGTTGAGAGGTCGGGAAGTCCTCAGCATCAGAAGATTTCAGCTAGGTGGGACCCGGATGAAGCATGCAGGCCTTTAATTGATGAAGCACCTGTATTTTATCCTACTGTTGAGGAATTTGAAGATACACTTGGGTACATTGCTAAGATTCGTCCTCAAGCTGAATCTTATGGTATATGCCGGATTGTCCCTCCGTCTTCTTGGAATCCACCATGTGTTCTCAAGGAGAAATGTATATGGGAAAATGCCATGTTTTCTACTCGTATTCAGCAAGTCGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAAAGTAGAGGAAGAAAACGCAAGCGAAGGAAGCACTCAAAAACAGGATCATCAGCTAGATGCATGAATCTGGGTGTAGAAGCAAACGTTACTTCTGAGTCTGATGAAAAATTTGGATTCAATTCTGGGTTAGACTTCACACTCAAAGATTTCCAGGCATATGCAGACTATTTTAAGGAACGTTATTTTGGAATTAAGAAGGCTCAAGAGGATTTAAATTTTGATATTGAACCTACCAAGAGATGGGAGCCTTCTGTGGAGGATATAGAGGGTGAATACTGGCGGATAGTTGAAAAATCTACCGATGAGGTTGAGGTTTACTATGGAGCTGATATAGAATCAGCAACATTTTGCAGTGGCTTTCCTAAGGCCTCATCCCTGGTAACAGATGGAAATTCGGATCCGTACGTAAAGTCAGGTTGGAATCTTAATAACTTCCCTCGTTTGCCAGGTTCTGTTCTTTGCTTTGAGGAAAGTGATATATCTGGAGTTCTAGTGCCATGGCTCTATGTCGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTAAACTATATGCACTGGGGAGATCCAAAAGTATGGTATGGAGTTCCGGGAAGCCACGCTTCTTCTTTAGAAGCTGCGATGAAAAAACATTTGCCTGATTTGTTTGCGGAACAGCCAGATTTACTTCATGAATTGGTCACTCAATTATCTCCTTCAGTACTCAAATCTGAAGGAGTACCTGTGTATCGAGTGGTCCAAAATTCCAGGGAGTTTGTTCTTACCTTTCCAAGGGCATATCATGCAGGTTTTAATTGTGGTTTCAACTGTGCTGAGGCTGTGAATGTGGCACCAGTTGACTGGTTGGTTCATGGGCAAAATGCCATAGAACTTTATAGTGCGCAACGGCATAGGACATCACTTTCACATGATAAATTGTTATTCGGTTCAGCTCGGGAAGCTGCCCAGGCCCTTTGGGAGATATTAGTTCTAGAAAAGAAAACTCCGAGTATTCTAAATTGGAAAAGTGTCTGTGGAATAGATGGAGATCTTACAAAAGTGATCAAGACAAGAGTGAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTAATATGAAGTTGCAAAAGATGGAAAGTGAGATTGATTGCAAAAGTGAAAGAGAGTGTTTTGCCTGCTTCTATGACTTATATCTCTCTTCAACCTCCTGCAAGTGTTCCCCCAATCGGTTCTCATGCCTTAAGCATGCTAGTAACTTTTGCTCGTGTCAAGTAGATGACAGGTGTGTTCTCTTTCGCTACAGTTTAAATGAGCTACACACACTTGTCGGAGCACTAGAAGGGGGGTTTGATGCCATTAAAGAATGGGCCTCAAGATACTGTAAAATGGAAAAGGACAATGAATCTGTAACCAAGGTTGAGTTGGACAGCGGATTAAATGAAAAACCATCTTGGTCCCCTGAAATAACAGATAATCTTAAAAGAACAGACGTCCCATGCAGTTCATCTAGCCATGCTTCTTCAGAAGTAGTGCAGTCAGAGTTTCATCGTGGATCACTTAGCCTTAATAATTCCCACCTTAGTTCCGATAGTCAAAATGACATTGTCAATAGTGAAGTTATGGTAATAAATAAAGGCAAGAAGGTGGAGCAGGAGTGCTGCATTGATTTGAACATTGACATAATTTCTGACGGTAATGGTAGTTGTGGGCCCCACAAATCGGATAGCAAGATAATCGTTGATTTGGATGAAACTTACCATTCGGTGTTTGCAGAAAAATACATTTGTAAAGCAGAACATGAATCAGATTTAATGAATATGGACACTGATCATGTAAACACTCCTCCGGTTAATGATTACTCTTCAAGTGTAGAAGATGGTGTGAGAATGTGTGGATCTAACGCCAGTAAGTTGTTTGGAGTTGATCTTTTGCAGTCGCAGTCGCAGTCAGCATTTCCATCCAACAACTACTCAAAAGTAGAAACTTTAAAACACTTAGATAAAAGGATGCCTTCTTGGCTAAGTTCTCCTTGGAAATTGGTTCCTTTTGTTGAACCTATAAATATTGGAACCATTATGTTTGGAAAGCCTTGGCACTGCGAGAAGGCCATATTTCCAAAAGGATTTAGAAGTCGAGTCAAATTCTTTAGTGTGCTTAATCCAACTAGTATCGTTACCTACACATCAGAAGTTCTTGATGCTGGGCTCCTGGGACCTCTATTCAAGGTGACCTTGGAAGAATCTCCCGGTGAAAACTTCACTAATGTCTCAGCAACCAAATGTTGGGACATGATAGTACAGAGAATAAACCAAGAAATCGAAAAACAGAACCTTAGATTGGGAGGAATACTTCCTTTGCAGCTTTTGAAGGAAGTTAATGGACTTGAAATGTTTGGATTTCTTTCACCTCCTGTTATCCAGGCTATCGAGGCTCTTGATCCTAAACACCAGTGTATGGAGTATTGGAACCACCGGCAGCAGTACGCAATACCCGCAAATTCAGGGAAGAGGATGAAACTGTCACTCCAACTATAGGAATGGAAGGGCATCATCAAAATGAA 3404 40.33 MDQNKLEADSEAKGDYSSRSSNKSNQTVERSGSPQHQKISARWDPDEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRPQAESYGICRIVPPSSWNPPCVLKEKCIWENAMFSTRIQQVDLLQNREPMKKKSRGRKRKRRKHSKTGSSARCMNLGVEANVTSESDEKFGFNSGLDFTLKDFQAYADYFKERYFGIKKAQEDLNFDIEPTKRWEPSVEDIEGEYWRIVEKSTDEVEVYYGADIESATFCSGFPKASSLVTDGNSDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSHASSLEAAMKKHLPDLFAEQPDLLHELVTQLSPSVLKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLVHGQNAIELYSAQRHRTSLSHDKLLFGSAREAAQALWEILVLEKKTPSILNWKSVCGIDGDLTKVIKTRVKMEEERMNCLPTNMKLQKMESEIDCKSERECFACFYDLYLSSTSCKCSPNRFSCLKHASNFCSCQVDDRCVLFRYSLNELHTLVGALEGGFDAIKEWASRYCKMEKDNESVTKVELDSGLNEKPSWSPEITDNLKRTDVPCSSSSHASSEVVQSEFHRGSLSLNNSHLSSDSQNDIVNSEVMVINKGKKVEQECCIDLNIDIISDGNGSCGPHKSDSKIIVDLDETYHSVFAEKYICKAEHESDLMNMDTDHVNTPPVNDYSSSVEDGVRMCGSNASKLFGVDLLQSQSQSAFPSNNYSKVETLKHLDKRMPSWLSSPWKLVPFVEPINIGTIMFGKPWHCEKAIFPKGFRSRVKFFSVLNPTSIVTYTSEVLDAGLLGPLFKVTLEESPGENFTNVSATKCWDMIVQRINQEIEKQNLRLGGILPLQLLKEVNGLEMFGFLSPPVIQAIEALDPKHQCMEYWNHRQQYAIPANSGKRMKLSLQL 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30978710 30986752 + XM_039038232.1 Bhi08g00942 41275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g00942 974 Pfam F/Y-rich N-terminus 817 861 IPR003888 GO:0005634
Bhi08g00942 974 PANTHER LYSINE-SPECIFIC DEMETHYLASE 13 957 - -
Bhi08g00942 974 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Bhi08g00942 974 MobiDBLite consensus disorder prediction 1 16 - -
Bhi08g00942 974 SMART fyrc_3 870 959 IPR003889 GO:0005634
Bhi08g00942 974 Pfam jmjN domain 57 90 IPR003349 -
Bhi08g00942 974 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Bhi08g00942 974 SMART JmjN_1 55 96 IPR003349 -
Bhi08g00942 974 Pfam F/Y rich C-terminus 868 955 IPR003889 GO:0005634
Bhi08g00942 974 MobiDBLite consensus disorder prediction 1 45 - -
Bhi08g00942 974 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 13 957 - -
Bhi08g00942 974 Pfam C5HC2 zinc finger 520 571 IPR004198 -
Bhi08g00942 974 MobiDBLite consensus disorder prediction 128 145 - -
Bhi08g00942 974 SUPERFAMILY Clavaminate synthase-like 256 457 - -
Bhi08g00942 974 ProSiteProfiles FYR domain FYRN motif profile. 806 864 IPR003888 GO:0005634
Bhi08g00942 974 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Bhi08g00942 974 ProSiteProfiles FYR domain FYRC motif profile. 866 955 IPR003889 GO:0005634
Bhi08g00942 974 MobiDBLite consensus disorder prediction 17 38 - -
Bhi08g00942 974 Gene3D Cupin 41 414 - -
Bhi08g00942 974 MobiDBLite consensus disorder prediction 122 146 - -
Bhi08g00942 974 Gene3D - 814 949 - -
Bhi08g00942 974 SMART fyrn_3 820 864 IPR003888 GO:0005634
Bhi08g00942 974 SMART cupin_9 264 430 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g00942 - - - csv:101214856 1746.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g00942 Bhi-Chr8:30978710 Bhi08g00944 Bhi-Chr8:30979196 0 dispersed
Bhi08g00941 Bhi-Chr8:30978504 Bhi08g00942 Bhi-Chr8:30978710 0 tandem
Bhi08g00942 Bhi-Chr8:30978710 Bhi08g00943 Bhi-Chr8:30979196 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g01093 . 1 1235 JUMONJI Transcription Factor Family AT1G08620 54.1 0.0e+00 1227.6
Bhi06g01094 . 1 1235 JUMONJI Transcription Factor Family AT1G08620 54.1 0.0e+00 1227.6
Bhi06g01095 . 1 1235 JUMONJI Transcription Factor Family AT1G08620 54.1 0.0e+00 1227.6
Bhi06g01091 . 1 1235 JUMONJI Transcription Factor Family AT1G08620 54.1 0.0e+00 1227.6
Bhi06g01092 . 1 1235 JUMONJI Transcription Factor Family AT1G08620 54.1 0.0e+00 1227.6
Bhi08g00942 . 64 955 JUMONJI Transcription Factor Family AT4G20400 51.1 5.2e-245 845.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1666 PF02373 JmjC 3.90E-45 CL0029 Bhi TR