Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01037 GTTCAAGTTCGTGGTATTTTCTGAAACTCTGGTGGCTGAGGTTTTAGCTGATAAACCCTAGAAAACCAGAGCAGCTTAAGCAAGGTGTCAGCTTCTTCTCTTTCATTATCAGTTCGAAATTCTAGCAAAAATCATCACTTTGAAGTCAATGCCATGGTTGTACCGGAGGAGAAAGTTCCCTCCTCATCAGAGGTAGAGGCAATGAACAAAAGGCGCAAGAGGAAGAGACCCAAGAAAAATCTTCCTTCAACGGGTGCCGAAGAATCGGAACTTCAAAATCCAGTGAAAGGTGAAGAAGAAGAAGGGGAAGGAGATGCTGAAGGAAATATTTCAGAGGAGAAAGTGAAAAAAGACGAGAAGAGGAAGAAGAAGAGGAAGACGAAAACAAAGACGAAGGGCGAGTTGGAGGAGGAAGGACACGAAAATGATGATGGTGAGGAGGGTGAGGATGGCATGGAAGGGAAAGTTGAGAACGATGAGGAGAAAGAGAACGAGGAAAAGAAGGTTAAAACTGGTGGATCAGGGATTATGACTACTGTTTCGTTTGATTCGCTTGACCTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATTCAAGCCAAAGCTATTCCACCTTCTCTGGTTGGGAAGGATATTCTTGGAGCCGCAAGGACTGGATCTGGGAAAACTCTTGCCTTCCTTATACCAGCTGTGGAGTTGCTACATCACATCTGCTTTACTCCTCGTAATGGAACTGGTGTTATTGTGATTTGCCCAACACGGGAGCTTGCAATGCAGACACATGAAGTGGCAAAAGAGCTTCTCAAATATCATTCACAGACACTTGGCCTTGTTACTGGTGGTTCTAGCCGACAAGCTGAGGCTGATCGTATTACAAAGGGGGTCAATCTATTAATAGCAACCCCTGGTCGACTTCTTGACCATCTTCAGCATACCAAGAATTTTGTGTTTAAAAATTTGAAGTGCCTCATAATTGATGAAGCAGACAGGATATTGGAAACCAATTTTGAGGAGGAAATGAAACAAATTATAAAGCTTCTACCAAAGAATAGGCAGACTGCTTTGTTCTCAGCAACCCAAACACAAAAGGTTGAAGATCTTGTTCGCTTGTCGTTTCAGTCAACTCCTATTTATATTGATGTGGATGATGGAAGAACAAAGGTCACCAATGAGGGGTTGCAACAAGGTTATTGTGTTGTGCCCAGTTCTAAAAGATTCATTCTTCTATATTCCTTCTTGAAGAGAAATTTATCTAAGAAAGTAATGGTCTTCTTCTCATCTTGTAACTCTGTAAAATTCCATGCGGACCTTCTTAGATACATTAAGGTCGACTGCATGGATATCCATGGAAAGCAAAAGCAGCAGAAGAGAACTTCTACCTTCTTTTCCTTCATCAAGGCTGAGACTGGGATCCTACTATGTACTGATGTTGCTGCACGAGGACTTGACATACCCGCAGTTGATTGGATTGTGCAGTACGATCCTCCAGATGAACCCAAGGAATATATTCATAGAGTTGGTCGAACAGCTCGAGGGGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTTGATTCCTGAAGAGCTTCAATTTCTTAGCTATCTAAAGGCAGCAAAAGTTCCCGTGAAAGAGTACGAGTTCAGTGATAAGAAACTGGCCAACGTGCAATCTCATCTAGAGAAGCTGGTTGGCAGCAATTATTATTTGAACCAGTCGGCTAAGGATGCTTACAGATCCTATTTATTAGCTTACAATTCACATTCGATGAAAGATATTTTCAATGTCCATCGTCTTGATCTTCAGGGTGTTGCTGCTTCATTCTGCTTTTCCAACCCTCCAAAGGTGAACCTTAATATTGACAGCAGTGCCTCAAAATTCAGGAAGAAAACGCGTAAAGTAGAAGGGAGCAGCAACAACAGGTTCAGTAAGAGGAAGAATGAAGGAGATGAGAGGCAATTTGTAAGATACTAGCTCGACTGCTGTTACTCAACAAACCCCTCCATCAATATTTTACTTTTGTTCAAATTTCATAGTTCAGGAAATTTTTACATTTATTTCCTGATGTTCCTACAATAGTCTGGTAACCAGATGTGATTTTGTATCCTAATATTTATACCCTAGGAAATTTTTTTAATGACAGCCACTTATTAAATTACACTGTGATGTAAATTTCTGGAATTTTTACATTTTCAAGGATTGAGGTCGAAATAAGAGAGTGAATTGATATTTTAGTTTTAAAAAA 2263 40.83 MVVPEEKVPSSSEVEAMNKRRKRKRPKKNLPSTGAEESELQNPVKGEEEEGEGDAEGNISEEKVKKDEKRKKKRKTKTKTKGELEEEGHENDDGEEGEDGMEGKVENDEEKENEEKKVKTGGSGIMTTVSFDSLDLSEKTLRAIKDMGFEHMTQIQAKAIPPSLVGKDILGAARTGSGKTLAFLIPAVELLHHICFTPRNGTGVIVICPTRELAMQTHEVAKELLKYHSQTLGLVTGGSSRQAEADRITKGVNLLIATPGRLLDHLQHTKNFVFKNLKCLIIDEADRILETNFEEEMKQIIKLLPKNRQTALFSATQTQKVEDLVRLSFQSTPIYIDVDDGRTKVTNEGLQQGYCVVPSSKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHADLLRYIKVDCMDIHGKQKQQKRTSTFFSFIKAETGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGSKGNALLFLIPEELQFLSYLKAAKVPVKEYEFSDKKLANVQSHLEKLVGSNYYLNQSAKDAYRSYLLAYNSHSMKDIFNVHRLDLQGVAASFCFSNPPKVNLNIDSSASKFRKKTRKVEGSSNNRFSKRKNEGDERQFVRY 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33828948 33835495 - XM_039039412.1 Bhi08g01037 41370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01037 612 CDD DEADc_DDX18 140 337 IPR044773 GO:0003724|GO:0005524
Bhi08g01037 612 Pfam Domain of unknown function (DUF4217) 511 571 IPR025313 -
Bhi08g01037 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 336 IPR027417 -
Bhi08g01037 612 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 281 289 IPR000629 -
Bhi08g01037 612 SMART ultradead3 148 353 IPR014001 -
Bhi08g01037 612 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 129 157 IPR014014 GO:0003724
Bhi08g01037 612 PANTHER RNA HELICASE 101 580 - -
Bhi08g01037 612 Pfam Helicase conserved C-terminal domain 366 469 IPR001650 -
Bhi08g01037 612 Gene3D - 104 341 IPR027417 -
Bhi08g01037 612 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 101 580 - -
Bhi08g01037 612 Gene3D - 346 593 IPR027417 -
Bhi08g01037 612 CDD SF2_C_DEAD 350 480 - -
Bhi08g01037 612 MobiDBLite consensus disorder prediction 88 103 - -
Bhi08g01037 612 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 519 IPR001650 -
Bhi08g01037 612 MobiDBLite consensus disorder prediction 104 119 - -
Bhi08g01037 612 SMART DUF4217_3 510 573 IPR025313 -
Bhi08g01037 612 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 335 IPR014001 -
Bhi08g01037 612 MobiDBLite consensus disorder prediction 1 122 - -
Bhi08g01037 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 485 IPR027417 -
Bhi08g01037 612 MobiDBLite consensus disorder prediction 586 612 - -
Bhi08g01037 612 Pfam DEAD/DEAH box helicase 153 324 IPR011545 GO:0003676|GO:0005524
Bhi08g01037 612 SMART helicmild6 389 470 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01037 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - csv:101209673 1008.05
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi03g00102 Bhi08g01037 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g01551 Bhi-Chr6:45779004 Bhi08g01037 Bhi-Chr8:33828948 1.00E-44 dispersed
Bhi07g00513 Bhi-Chr7:21378137 Bhi08g01037 Bhi-Chr8:33828948 1.42E-86 dispersed
Bhi08g01037 Bhi-Chr8:33828948 Bhi08g01317 Bhi-Chr8:39965305 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g469 . . . . . . . . . . . Cma07g00085 . Car07g00079 Sed10g0107 . . Bhi03g00102 Tan03g2726 Cmetu04g2111 . Hepe04g2015 . . Cla01g02426 Cam01g2539 Cec04g2186 Cco04g2263 Clacu01g2558 Cmu01g2424 Cre04g2086 . . . . Lsi01g00125 Csa06g03809 . Cme08g00117 Blo08g00267 . . . . . . . . . Cmo07g00087 . . . . Cpe19g01152 . Bhi08g01037 . . . . . . . . . . . . . . . Chy02g00123 .
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi08g01037 Bhi_Chr08 FPKM 3.377012 2.338726 2.07758 0.433752 0.61366 1.176326 0.746391 0.0 0.0 0.0