Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01047 ACGCTCGCAATTTTTTTTTTTTTTTCTTTCCTGTTTTATTCTCTTCGATAAACGGATAATAAAATATCAAAGAACGAGAACGGCGGCCCCTTTGCCCAAGTACTGATCGTCGACGACGATCCCATCTGAATTCTTTCGCCGGAATTAATCGAGGCGGTCCGGCCACTCTGCCACTCATCGACGATGGCGGAGGACTCAACTAACTCTTTCGTCTCCCCAGAAGATCGCATAAAAGCCCTCATTTCTTGTCCTTCCGCGAGTACGAAATCCGGGGCCGAAAACGAATCTGTAGAAGGTGGATTTGATGAAAATCAGTCGCTGAAAGACGACAACCCTTCTTCTATCTGTGTAATTTGCTTTTCCGATGATGGAAAAGCGGAGAGAGGTAAGCTTGATTCCTGTGACCATTATTTTTGCTACGTCTGCATCATGGAGTGGGCGAGGATTGAATCTAGATGCCCTGCTTGCAAGGGCAGGTTCACTGTTATTCATAGAATTGCGAAGGATGGCTGTCGTCTCCGTGAACGAATTGTTGATATTCCAATGCGGAATCAGGATCACTCTGCTTCTGGAAATACTACGATTAGGGATCCGTATGCAGAAACATGTTGTACTGTGTGCAGGAGTATGGAAGATGAAGGTCTCATGTTACTCTGTGATCTCTGTGATTCAGCTGCTCATACTTATTGTGCTGGTCTTGGTGCTAATGTACCTGAAGGTGATTGGTTTTGCCATGATTGCACTATCTCCAGGGCTCGACATACTGATCCTGAATTGGATACTAGTTTCAACGATCAAAATCAAACAGCAACAGTTGAACCACACATTGCCATTTCCGTTATAGTAAAAGAACCAAGTGCTCAAACAGTTGCCATAACTCGCAGAAGTGCTCTTTTACATTCAAATCGTGAGCCACCTTCTGCTGTCCCCAGTTCAAGAAGCAGTGTGGCCCATAAATCATTGCCTAGTCGTGGTGGTAAAGCTGCGGGGACAAGTGCAAGAACATTACGTCGCTGTCGGAACATCCATAGCCATATAAGGGCATTACGTGATAATTGGGATGCTTTACAAAGAGGGTCACTGAACTTTCCTGCTAGCAGCTCATCGACATATTACAGCAACACTTCCAAACAAAATACTCGTGCTGCACTAAACAACCAAACAGGTCAACCCCACTTTTCCACAGGCATTAGCTTGCAGGCGACCTCTGGACCTGTGTGTAATGGAATCTCTTATGATGTTGAGAAGGCATGGCGGATGATGGAAAGTGCAAAGGCAGAGGCTATATGTGCGGGAGATCAAACCTTGAGACATCCTGCTAAGAGACAAATGAGCACAAAAACGGAAGATTCTCGTACAACGAAAGGTCAACAGTACAAAATCAAGAAGCCAAATGAGCCAGCCAAGCATAAAAAGGAAATGGGAAAACAAAGATTGCTCGAGTTGGATAAGCTAATGTGTCATCCAGTAGCAAGTAAGAAGTATAAAGCTTCTGATGAGTTTTTTCCTACAAATTCATCCAGTTATGGAGAATCTTCCTTGGTTAATATGGTTCACACTTGTCGAGATGATTTCAACTATGAAAACAGAAGAAAGCCATCAAACAAAATGGTGGATGAACTTTCATCATCCTCCACAATGACACAAGCCTCGGAAAAACGCCATCCCACTCAGGAGGCTGGCAATGATCACGATTCCAAAAGTGAGATACGAACACTGGTCAAGATCAATCTAAAACTCCTAAGCCGAGGCAAAAATTTGGGATATGAAGGATACAAGGAAGTGGCAAGGCTTGCAACACACACAATCATGGCAGGATGTGGTTTAGAACCCCCTCCAAGACCGAGCAAGCGATTCTTATCGTGCTCGGTTTGTAGACATACACAAGAAGAAATCCAACGGCTTCACAGGTCCACTCTGATGCCAAATTCTTGCAGGGAATGCTTCCTGGCGTTTGTGAAGGATGTTGTTAATGCCATAATGTTAGAAAAACTAGTGGTGGGTTCTTCTTCCTAAGCTGTAAAGAAACTAAATTATGTGTATTATTTACCAGAAGAGTCGGGAGAGGACAGAATAAAAGCAGAGAGTTGAAAATTAGTCGGGTTAGAGGTAGAAGAAGGCCCATTTTGATTGACTTTTCAAGTGTTTATAAACACGTTTTTGGTTCTTAGAAACACTTATTTAAATACTTAGAAAGTTAATCTAGCACGCCTGGAAAAAAAGAAAAAAGAAAGGAGAAAGGGGTGTTGAGTGAGGGATTTGTTGGAACATGTGGTGGGGCTAAGGGCTGATGTGAAAATGCTTTGTGCTTTGCTGTGGAGTCTCTGTGAAAGCACTTCAGAAAAGCGCTTTGCGACAATATCACGTGACTTTCAAGAACGTCAGCAGAAGTGGACTTGGCCATTGTTTTTTTGTTGGTACTCTTGTATTTCTTCTCTTCACACTTTGAATTTTTCTTCGTAAATAATTATTATTATCATTATTAGTTTAGTATTTCAA 2499 42.62 MAEDSTNSFVSPEDRIKALISCPSASTKSGAENESVEGGFDENQSLKDDNPSSICVICFSDDGKAERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFTVIHRIAKDGCRLRERIVDIPMRNQDHSASGNTTIRDPYAETCCTVCRSMEDEGLMLLCDLCDSAAHTYCAGLGANVPEGDWFCHDCTISRARHTDPELDTSFNDQNQTATVEPHIAISVIVKEPSAQTVAITRRSALLHSNREPPSAVPSSRSSVAHKSLPSRGGKAAGTSARTLRRCRNIHSHIRALRDNWDALQRGSLNFPASSSSTYYSNTSKQNTRAALNNQTGQPHFSTGISLQATSGPVCNGISYDVEKAWRMMESAKAEAICAGDQTLRHPAKRQMSTKTEDSRTTKGQQYKIKKPNEPAKHKKEMGKQRLLELDKLMCHPVASKKYKASDEFFPTNSSSYGESSLVNMVHTCRDDFNYENRRKPSNKMVDELSSSSTMTQASEKRHPTQEAGNDHDSKSEIRTLVKINLKLLSRGKNLGYEGYKEVARLATHTIMAGCGLEPPPRPSKRFLSCSVCRHTQEEIQRLHRSTLMPNSCRECFLAFVKDVVNAIMLEKLVVGSSS 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34424088 34427854 + XM_039039406.1 Bhi08g01047 41380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01047 610 MobiDBLite consensus disorder prediction 379 413 - -
Bhi08g01047 610 SMART PHD_3 142 187 IPR001965 -
Bhi08g01047 610 ProSitePatterns Zinc finger RING-type signature. 73 82 IPR017907 -
Bhi08g01047 610 MobiDBLite consensus disorder prediction 465 505 - -
Bhi08g01047 610 SMART ring_2 143 186 IPR001841 -
Bhi08g01047 610 SMART ring_2 55 95 IPR001841 -
Bhi08g01047 610 MobiDBLite consensus disorder prediction 235 274 - -
Bhi08g01047 610 Pfam PHD-finger 143 187 IPR019787 -
Bhi08g01047 610 SUPERFAMILY FYVE/PHD zinc finger 136 190 IPR011011 -
Bhi08g01047 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 214 IPR013083 -
Bhi08g01047 610 ProSiteProfiles Zinc finger RING-type profile. 55 96 IPR001841 -
Bhi08g01047 610 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 10 604 - -
Bhi08g01047 610 PANTHER F18C1.6 PROTEIN 10 604 - -
Bhi08g01047 610 MobiDBLite consensus disorder prediction 25 45 - -
Bhi08g01047 610 Pfam Ring finger domain 55 96 IPR001841 -
Bhi08g01047 610 MobiDBLite consensus disorder prediction 377 413 - -
Bhi08g01047 610 MobiDBLite consensus disorder prediction 244 258 - -
Bhi08g01047 610 ProSiteProfiles Zinc finger PHD-type profile. 140 189 IPR019787 -
Bhi08g01047 610 MobiDBLite consensus disorder prediction 477 494 - -
Bhi08g01047 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 107 IPR013083 -
Bhi08g01047 610 SUPERFAMILY RING/U-box 49 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01047 - - - cmo:103495032 984.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g02164 Bhi-Chr2:58905826 Bhi08g01047 Bhi-Chr8:34424088 1.81E-40 dispersed
Bhi02g02165 Bhi-Chr2:58905826 Bhi08g01047 Bhi-Chr8:34424088 2.10E-40 dispersed
Bhi08g01047 Bhi-Chr8:34424088 Bhi12g00119 Bhi-Chr12:3812379 1.69E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1674 PF00628 PHD 1.00E-08 CL0390 Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi08g01047 Bhi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0