Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01062 GAAGGGTTGGTCAGTTTCTTTGCCAAGACTAGAAAGAAAGAAAGAAAGAAAGATAATAATAATAATAATGGGAAGAGGAAGAGTTGAATTGAAGAGAATTGAAAACAAAATTAACAGGCAAGTCACTTTTGCCAAGAGAAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTAATCGTGGCAAGCTCTTTGAGTTTTGTAGTGGCTCTAGCATGACCAAGACGCTCGAGAAATATCGAAGATGTAGTTATGGTATATTGGATGCTGCCCATCAAGTAAATGAGAATCATCAGCCAAGCTTTGATGATTATTTGAACCTAAAAGCCACAGTTGAATTCATGCAGCAATCTCAAAGAAACCTTTTGGGAGAAGATTTAGGTCCATTGAATACTAAGGAACTTGAGCAACTTGAACATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAAGCCTACTTGACCAGCTTGCAGAACTTCAACACAAGGAACATATGCTTGTTGAAGATAATCGAGGTTTAAGAAAAAAGCTGGAAGAAAGCAGTGCACAACTAGCGGCAGCGGCCGCCGCATGGGGCTGGGAAGGCGCCGCCGGAGGCCACAGCATGGAGCATCCCAGCCGTGTTGCTTCACAATCAGACGCCTTCTTCCACCCCATAATTCAACCCACTCCCACTTTACAAATGGGGTACAATTCTGTTGGGTCAATGGGGTTGAATAATGTTGGACCTCCATCTCAAAATGCCAATAACGCATATCACTTTGGCTGGATGATTTAAGGCTAAACTCAAAATAATCATAGTCTCCTATCAAAAAAATAAAAAAATAAAAAAAATGAAACTCTTATATATAGCTTTCGAATAATTTCGGTTAATTAATTTAGTCCCGTGCGCGATCCCGATTGAGACGATAACCTAGTATATGAATTTGAAGCTTGGTCTGTATTTGAGCTATCAATTGCTCATTACTTATATTCTATAACTTTGTTCTCTAATGTA 1048 39.5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCSGSSMTKTLEKYRRCSYGILDAAHQVNENHQPSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNTKELEQLEHQLETSLERIRSTKTQSLLDQLAELQHKEHMLVEDNRGLRKKLEESSAQLAAAAAAWGWEGAAGGHSMEHPSRVASQSDAFFHPIIQPTPTLQMGYNSVGSMGLNNVGPPSQNANNAYHFGWMI 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34598902 34603098 - XM_039039297.1 Bhi08g01062 41395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01062 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi08g01062 253 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Bhi08g01062 253 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 236 - -
Bhi08g01062 253 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi08g01062 253 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bhi08g01062 253 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi08g01062 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi08g01062 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi08g01062 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi08g01062 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi08g01062 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi08g01062 253 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Bhi08g01062 253 Coils Coil 165 185 - -
Bhi08g01062 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 236 - -
Bhi08g01062 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi08g01062 253 Coils Coil 125 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01060 Bhi-Chr8:34598902 Bhi08g01062 Bhi-Chr8:34598902 1.84E-145 dispersed
Bhi08g01062 Bhi-Chr8:34598902 Bhi12g02451 Bhi-Chr12:77158681 6.86E-87 dispersed
Bhi08g01059 Bhi-Chr8:34581833 Bhi08g01062 Bhi-Chr8:34598902 1.35E-54 proximal
Bhi08g01061 Bhi-Chr8:34598902 Bhi08g01062 Bhi-Chr8:34598902 6.80E-143 tandem
Bhi08g01062 Bhi-Chr8:34598902 Bhi08g01063 Bhi-Chr8:34598902 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1678 PF01486 K-box 2.90E-25 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01062 K09264 - csv:101204197 423.705