Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01140 TTTCTTTCCTAAAGATTTTGGCGCTGATGTCCAGTCGCATTGTGTCGAATGTGAGAGATAAATGGAAGTTAACAAAACCGCCATTTCCGCCATTGGAAGAAGCTCCAGAGTTGGGCAACAATTTATTTTCTCTGTATTGAAGTGCTGTATATCTGTTCGTAATCTTGCGAAGATCCATGCCCAAATACTTGTCAGCGGCTTTGCCCAGAAAAATTACATCCTCGTCAACCTTTTGTCGCTCTATATCTCTTTTGGTTCTCTTGGAACTGCCCAGAAAGTTTTCGAGGACACTAGTGCACCGAGTACGACTGTGTGGAACCAGATAATTAGAGGCCATGCTCGGAGCAAAACGCCCCAAGAATCAATTCAGCTGTTCAAACGGATGACGGCGGCGGAAGTTGAGGCTGATGGGTTCACGTATTCGTTTCTTCTGAGTGCGTGTGTGAGATCGAGGTTGTTCAGAGAGGGGGAACAGATACATGGGAGAGTTTTAGTAAATGGGTATTGGTCCAACACATATGTTAGAACGAATTTGATCAATTTATACGCAAATGGTGGAGGTGTAGGGGATTTTGATCTTAAGCGTGCGCGTTACATGTTTGATGAAATGCCTGACGCAAATGTCGTAGGTTGGAATTCCTTGCTCGCAGGGTATGTTAGACGTGGTGATTTTGATGGGGCTAGAAAAGTTTTCGACGAGATGCCTGAGAGGAATGTCCAGACATGGACTACAATGGTTGCAGGATTTGCTCAAAATGGCCAGTGTAAGCTAGCTTTGTCACTATTTAATCAAATGAGAAGGGCTGGTATGGAATTGGATCAGGTGGCATTGGTGGCTGCATTGTCAGCTTGTGCTGAATTGGGAAACTTGACATTGGGAAAATGGATTCATAGGTATGTTGAAAGAACATGGCGGAGTAGACACCTCCCAGTTTTGGTGTCTCTGAACAATTCTCTGATGCACATGTATGCAAGTTGTGGTGTTATGGATTTAGCATATAAAGTGTTCAAAGAAATGTCCCGACGAAACACTGTGTCTTGGTCGAGCATTATAACTGGGTTTGCGAAACAGGGTTGTGGAGAAGAAGCTATTAGAGTCTTTCAGTTAATGCTGTGCTCTGGCCAAAATGAAGTGAGACCTGACGAGATAACCTTCGTTGGAGTTCTCACTGCTTGTAGTCATGCCGGTTTAATCGATGACGGCATCCGACTTTTCCAGTCTATGCACAAAATTTTCGAAGTCATCCCACAGATTGAGCATTATGGATGCATGGTTGATCTCTTGAGCCGTGCAGGTTTACTGAATGAAGCGTTGAAGCTGATTGAAAGTATGCCAATGAAGCCAAACAATGTCGTATGGGGTGCACTTCTCAACGGCTGTAGAATTCACAAGAATGACAAGATCGCATCCCATGTCGCAAAACAATTGGCTTTGGAAATTGATCCCTGCAACCAAGCTGCTGGATACTTTATGCTCCTAGCTAATGTTTATGCTGCAGACAAACGTTGGCGAGACACTGCCATTGTGAGACAGAACATGCTCGACATAGGAGTGAAGAAACCTTCAGGCAGAAGTTGGATCGAGATAAATGGAGTCGTATGTGATTTCGTGGCAGGGGATGAGACTCATAAGGATGTGAGTTTAATTTACGAGATGCTTGGTAACATAACCAGACAAGCCCGGATGGAAAGCTGCAAATCAGAGACAATATCAGAGGCAATTGTTGGTGACTAATGGAGGCAGTTGGGGAACTGAGATGAAAGACTTCTGGTAAGATTGCTATTTTGCTGCTGCAACATACTAGTTGAAACTAAATGTAGCAATAGCATTTGTTTAGCCTTGTAGTTCTCTCAATCTTATTCTCAACTCTTCTGAAGAATCTATGCAAATGTTTATGGTATCAATGGAAGTTTCAATTATAAAACCTTTTATGAA 1936 43.13 MEVNKTAISAIGRSSRVGQQFIFSVLKCCISVRNLAKIHAQILVSGFAQKNYILVNLLSLYISFGSLGTAQKVFEDTSAPSTTVWNQIIRGHARSKTPQESIQLFKRMTAAEVEADGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNTYVRTNLINLYANGGGVGDFDLKRARYMFDEMPDANVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVQTWTTMVAGFAQNGQCKLALSLFNQMRRAGMELDQVALVAALSACAELGNLTLGKWIHRYVERTWRSRHLPVLVSLNNSLMHMYASCGVMDLAYKVFKEMSRRNTVSWSSIITGFAKQGCGEEAIRVFQLMLCSGQNEVRPDEITFVGVLTACSHAGLIDDGIRLFQSMHKIFEVIPQIEHYGCMVDLLSRAGLLNEALKLIESMPMKPNNVVWGALLNGCRIHKNDKIASHVAKQLALEIDPCNQAAGYFMLLANVYAADKRWRDTAIVRQNMLDIGVKKPSGRSWIEINGVVCDFVAGDETHKDVSLIYEMLGNITRQARMESCKSETISEAIVGD 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36021307 36023242 - XM_039039475.1 Bhi08g01140 41473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01140 557 Pfam E motif 443 508 IPR046848 -
Bhi08g01140 557 Pfam PPR repeat family 187 220 IPR002885 -
Bhi08g01140 557 Pfam PPR repeat family 322 373 IPR002885 -
Bhi08g01140 557 Gene3D Tetratricopeptide repeat domain 355 525 IPR011990 GO:0005515
Bhi08g01140 557 Gene3D Tetratricopeptide repeat domain 284 354 IPR011990 GO:0005515
Bhi08g01140 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Bhi08g01140 557 Gene3D Tetratricopeptide repeat domain 33 169 IPR011990 GO:0005515
Bhi08g01140 557 Gene3D Tetratricopeptide repeat domain 170 283 IPR011990 GO:0005515
Bhi08g01140 557 Pfam PPR repeat 400 425 IPR002885 -
Bhi08g01140 557 Pfam PPR repeat 221 249 IPR002885 -
Bhi08g01140 557 Pfam PPR repeat 118 147 IPR002885 -
Bhi08g01140 557 Pfam PPR repeat 84 109 IPR002885 -
Bhi08g01140 557 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 13 535 - -
Bhi08g01140 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Bhi08g01140 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Bhi08g01140 557 PANTHER OS09G0411600 PROTEIN 13 535 - -
Bhi08g01140 557 TIGRFAM PPR: pentatricopeptide repeat domain 325 354 IPR002885 -
Bhi08g01140 557 TIGRFAM PPR: pentatricopeptide repeat domain 191 219 IPR002885 -
Bhi08g01140 557 TIGRFAM PPR: pentatricopeptide repeat domain 297 323 IPR002885 -
Bhi08g01140 557 TIGRFAM PPR: pentatricopeptide repeat domain 221 253 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01140 - - - cmo:103488102 983.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01140 Bhi-Chr8:36021307 Bhi09g01793 Bhi-Chr9:48755078 1.12E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g580 Blo04g00778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00087 . Chy12g01527 . . . . . . Bpe15g00596 . . . . . . . . . . . Bhi08g01140 . . . Hepe07g2495 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014193 0 1 1 0 1 0 1 1 1 1 0 1 1 0 1 1 1 2 0 0 1 1 1 1 1 0 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi08g01140 Bhi_Chr08 FPKM 106.425758 109.310577 131.532761 138.250122 187.651932 185.101837 179.179901 252.376465 259.607697 245.088104