Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01149 AAATAAACAAATTTTGCTGATTGGTTGCTCTAATTTTCACAGCCCGAAATCATAGGCTGACCTTTCGTGCGATCTTGTAAGCAGAGCATTGAATGAATGCCTTTGCCTTTCCCTTTCCTGTTTTGCTGCCCGCCATTCTCCCTTTCCGCCGGTCCCTTCCCTTTTAACTTCCTCCCTCTCTTCCTCTTCTTCTTTTTCTTCTTCATTCACTTCCCCTTTCTCGGTGCGATTCATATCGTACCTCCCCCTTCCCCTTTCCTCACTTGGGTTCTCCCCTTTTTCTTTGATCTTCATCCCTTTTACTTTCTCTCCCATTTCCCTCTCTTGGATTCTCTCAATCTTCCCTTTTTCCCATTTCCTCACTTGGGTTCTCCCTACATTTCCCTTTTTGAGACTTCTTTGTCCATTCTCATTCTTTGTATTGCCTCTTTTTTGGAAACAGGGGAACCCCATTAATGGCTAGCTACCGAACTTTAATGACCTCTTAATCCCTTGGAAGAATACGGGGATAGAGATAGGGCTTTGTTGATTTCATTGCGTTTTTTTAAAAAAATTTAAAATTTTTTTATTTTTATTTTTTTTCTTTATAATGGGAAGGGTTAAGCTGAAAATAAAGAAATTGGAGAGCACTGGTAGCAGGCAAGTGACTTACTCTAAGAGAAGAAATGGGATTATGAAGAAAGCAAGGGAGCTAGCTATACTTTGCGATATTGATATCGTTCTCCTCATGTTTTCGCCAAGTGGAAAGCCGGCGCTATATGAAGGTGAACGCAGCAACATCGAGGAGGTCATTACAAAATTTGCTGAATTGACTCCACAGGAGAGGGCAAAAAGGAAAATGGAAAGCCTTGAAGTGTTGAAGAAAACATTTAAGAAGTTAGACCACGATGTTAACATAAAAGATTTTGTGGGTTCAAGCTCTCAAGATTTTGAGCAGGAATTGACCAATGAAGTTACCATATTGCGAGATCAGATTGGCGAAGCACATAAGAGACTGAGCTATTGGAGGAATCCTGATAGTATCAACAATATGGAGCAGCTCCAGCAGATGGAAGATCTAATAAGGGAGTCCTTAAACCAGACACGTCTACACAAGGAAAATTTAAGAAGACAACAACTACTCTCACAGGACTTCACGGGCCAGTATTCGGGTGGTGGGATGTCCTTACCTTTGTTAATGGACGAAATGCAAAGTACTCAACCCCTGTTATGGCTTCCCAACTATGGCACTCAACAGATTACTTTACCAAATGAGCCTAGCTTTCTGCAACCAGGTGATGTTGAATGCTCATTTCCAAGCTATCCTAGTTTCTTCAACCCTGGGAAAATTGAAGCTGGAATCTCCGGTCATGTTGATAGCATGCCACAAGGTGATGGGGCATTAAATGAATTAAGTGGAACTTCTTGCTCAACATTGCAACTTGGTGATCAATATCCATACCCTACATGTGATGGTTCCAGCTTCCAAGATGAAAAGAGACTGAAAATAGAGATGGAGATGAACTTGCATGCAACTTGTGTGGACACTCAACTAAATGGAAAGTTGGAGCTCTCTAGATCTCTATATGACGATGACCAGCATCCATGGGTTGCTATACCAGGGCCTTGTAGCATTCCAATGTACCAAAGCAATGCATATCACCATCAGCCAAATTGATTCCAATCGAATTTCACCAGTAATTGGACGGGTAACAGATTGAAGAAATGTTCCTCTTGATTGATGAATGATGTGGTCAGCATTTTTGTTGGGATAGCATCCTTCTCCCAATTGCCAGTCAAAAGTATTCGATATATAATGAGATCAGAATGATCTTCGCTCCTCATTTTGCCGTTTAACCAATATCCTCGACTTGTAAATACAATATATACGAGATCAGAGGTTGGTGTTTTAGGTTAGATTTTCTTTTTTTTCCCTTTCCCTCCTCATGGAAGAGCTGTAAAATATTTGGGGTTTTCTGGTTTCCTTAGCTGTACATTGAGCTTTGTAAAACATGGACGCAAATTTCATACTTCTTATATCATATTTCGAGAAAATTAAAGAAGTCGGCATGATTACAATCTTTCTTTCTCAGTTAAACCAAGTTGCATACTTTTATACTACATTTATATAACTGCTACCATCCTGTACAATGATAGTTCCCATGTCTACAATCACACAGATCACACAATATTGCACATAT 2180 40.05 MGRVKLKIKKLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGKPALYEGERSNIEEVITKFAELTPQERAKRKMESLEVLKKTFKKLDHDVNIKDFVGSSSQDFEQELTNEVTILRDQIGEAHKRLSYWRNPDSINNMEQLQQMEDLIRESLNQTRLHKENLRRQQLLSQDFTGQYSGGGMSLPLLMDEMQSTQPLLWLPNYGTQQITLPNEPSFLQPGDVECSFPSYPSFFNPGKIEAGISGHVDSMPQGDGALNELSGTSCSTLQLGDQYPYPTCDGSSFQDEKRLKIEMEMNLHATCVDTQLNGKLELSRSLYDDDQHPWVAIPGPCSIPMYQSNAYHHQPN 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36269152 36273942 - XM_039038892.1 Bhi08g01149 41482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01149 355 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Bhi08g01149 355 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi08g01149 355 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi08g01149 355 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi08g01149 355 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 354 - -
Bhi08g01149 355 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi08g01149 355 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bhi08g01149 355 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Bhi08g01149 355 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 354 - -
Bhi08g01149 355 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01149 - - - csv:101220182 657.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01149 Bhi-Chr8:36269152 Bhi08g01151 Bhi-Chr8:36269712 0 dispersed
Bhi08g01148 Bhi-Chr8:36269152 Bhi08g01149 Bhi-Chr8:36269152 0 tandem
Bhi08g01149 Bhi-Chr8:36269152 Bhi08g01150 Bhi-Chr8:36269152 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g565 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00080 Csa01g00558 Chy12g01534 Cme12g01984 . . . . . . . . Sed01g2340 . . . . Car13g00970 . . . Bhi08g01149 Tan05g2432 Cmetu12g1892 . Hepe07g2502 . . Cla04g01191 . . Cco01g1805 Clacu04g1277 . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01150 . 1 233 Type I MADS-box Gene Family AT2G03060 53.2 7.6e-60 228.8
Bhi08g01151 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01149 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01148 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01152 . 1 227 Type I MADS-box Gene Family AT2G03060 53.2 2.7e-57 220.3
Bhi11g01095 . 7 159 Type I MADS-box Gene Family AT2G24840 54.5 1.4e-36 151.0
Bhi11g01095 . 1 165 Type I MADS-box Gene Family AT5G60440 59.5 5.8e-47 185.7
Bhi01g02468 . 1 174 Type I MADS-box Gene Family AT1G77950 58.3 2.5e-51 199.9
Bhi07g00164 . 1 163 Type I MADS-box Gene Family AT5G48670 63.2 6.8e-54 208.8
Bhi07g00165 . 1 163 Type I MADS-box Gene Family AT5G48670 61.3 1.1e-51 201.4
Bhi08g00789 . 1 158 Type I MADS-box Gene Family AT5G48670 57.6 1.4e-46 184.5
Bhi08g00790 . 1 158 Type I MADS-box Gene Family AT5G48670 52.5 7.8e-42 168.7
Bhi08g01150 . 1 233 Type I MADS-box Gene Family AT2G03060 53.2 7.6e-60 228.8
Bhi08g01151 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01149 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01148 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01152 . 1 227 Type I MADS-box Gene Family AT2G03060 53.2 2.7e-57 220.3
Bhi11g01095 . 7 159 Type I MADS-box Gene Family AT2G24840 54.5 1.4e-36 151.0
Bhi11g01095 . 1 165 Type I MADS-box Gene Family AT5G60440 59.5 5.8e-47 185.7
Bhi01g02468 . 1 174 Type I MADS-box Gene Family AT1G77950 58.3 2.5e-51 199.9
Bhi07g00164 . 1 163 Type I MADS-box Gene Family AT5G48670 63.2 6.8e-54 208.8
Bhi07g00165 . 1 163 Type I MADS-box Gene Family AT5G48670 61.3 1.1e-51 201.4
Bhi08g00789 . 1 158 Type I MADS-box Gene Family AT5G48670 57.6 1.4e-46 184.5
Bhi08g00790 . 1 158 Type I MADS-box Gene Family AT5G48670 52.5 7.8e-42 168.7
Bhi08g01150 . 1 233 Type I MADS-box Gene Family AT2G03060 53.2 7.6e-60 228.8
Bhi08g01151 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01149 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01148 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01152 . 1 227 Type I MADS-box Gene Family AT2G03060 53.2 2.7e-57 220.3
Bhi11g01095 . 1 165 Type I MADS-box Gene Family AT5G60440 59.5 5.8e-47 185.7
Bhi07g00164 . 1 163 Type I MADS-box Gene Family AT5G48670 63.2 6.8e-54 208.8
Bhi07g00165 . 1 163 Type I MADS-box Gene Family AT5G48670 61.3 1.1e-51 201.4
Bhi08g00789 . 1 158 Type I MADS-box Gene Family AT5G48670 57.6 1.4e-46 184.5
Bhi08g00790 . 1 158 Type I MADS-box Gene Family AT5G48670 52.5 7.8e-42 168.7
Bhi11g01095 . 7 159 Type I MADS-box Gene Family AT2G24840 54.5 1.4e-36 151.0
Bhi01g02468 . 1 174 Type I MADS-box Gene Family AT1G77950 58.3 2.5e-51 199.9
Bhi08g01150 . 1 233 Type I MADS-box Gene Family AT2G03060 53.2 7.6e-60 228.8
Bhi08g01151 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01149 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01148 . 1 234 Type I MADS-box Gene Family AT2G03060 52.9 1.9e-58 224.2
Bhi08g01152 . 1 227 Type I MADS-box Gene Family AT2G03060 53.2 2.7e-57 220.3
Bhi11g01095 . 1 165 Type I MADS-box Gene Family AT5G60440 59.5 5.8e-47 185.7
Bhi07g00164 . 1 163 Type I MADS-box Gene Family AT5G48670 63.2 6.8e-54 208.8
Bhi07g00165 . 1 163 Type I MADS-box Gene Family AT5G48670 61.3 1.1e-51 201.4
Bhi08g00789 . 1 158 Type I MADS-box Gene Family AT5G48670 57.6 1.4e-46 184.5
Bhi08g00790 . 1 158 Type I MADS-box Gene Family AT5G48670 52.5 7.8e-42 168.7
Bhi11g01095 . 7 159 Type I MADS-box Gene Family AT2G24840 54.5 1.4e-36 151.0
Bhi01g02468 . 1 174 Type I MADS-box Gene Family AT1G77950 58.3 2.5e-51 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012582 0 5 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1690 PF00319 SRF-TF 1.20E-19 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi08g01149 Bhi_Chr08 FPKM 24.196079 28.493408 58.905548 55.271046 30.380884 31.318806 26.146505 53.64978 51.720474 55.501987