Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01245 AAGAAGCAAACATCGGATTCATAAATCAATTGGTTGCTCCGACTTTTCTTTGATGATGACCGTTCTCAGTCAGTGAAAAGACAAGAAGATTGATACCTAATAATTATCTCTATTCTGATCCTTTCATTGTTCAGAAACTCAAAAAAAATGAAAATCTACCTAAAACCCAGAAATAGTACCTTCTTCATAATCTTCATCGCGATTCATCTTTCACCATGTTTCAACGAAGGCGCCCTCGATGCATTTGAAGTTTGCGGTGAGAGTTACAATTGTGGAGAATTGGTAAACATCAAGTATCCCTTCTGGGGGAACAAGAAGCAGAAGTCTTGCGGGCGGCAAGAATTCAAACTGAACTGCAGGAAAAATCAAACCACCACAATTTACATAAATTCTGTGGAATACAACGTTCTGAAAATCAACCAATCGAATAATGGAATGAGGATAGCAAGATCAGACCTATTCGAGAATTACTGCCCAGAAAATGAAATCCAAGTGGCGACTATGGATGCGCATCTGTTCGCGTACGCTTCCAACAATCAGAACATATCGGTGTGGTACAATTGCTCGGGGGAAAACTACATTCCAACTCCGAAGAGGTACAAATTTTGGTGCAGTGGGAAATGGGGAAAGCTTGGGAGAGCGAATTATGCATTCGAATCGTCGGCGGCGAATCGGAACATGGAAAAGGGAGAATGTACAATGAATATAGAAGTGATGGTTACGATAGATTTGTTGAAAGAAGGTATAAAAGGGGGGAAAAGTTTGGTGGAGAAGGCTGTGAAATGGGGTTTCGATGTTGAATACGGGAATTGGTATAAGGAAGCTTGTAATGAATGCAATGAAAGTGGAGGCAAATGTGGAGGGAACAAGACGTATCCATTTTACTGCATTTGTAAGAACGGAGTTGCTAATCCTTACGACTGTAAAGCTGCTCTTCCTCCTCCTGCCCTTAAGATTAAAGGATCAAATGATAATTGGAAGAAGGTTGTCATAGGTGTTGGCTCTGGTTTTGGAGGCATAGTGATTACGAGTCTAATCTTTTTCATTAGGCTTCGTTTGAACAAAAAGAAGCATTTTCGTGCTTCCTCCTCCATTCTCCTTCAAAACAATTCTCGTGATCGTCTAATGAAGGAACTTGAGAAAGGAGAAAATTACATAACTGTTCCTCTCTTCTCCTATCAAGAACTTGTACAAGCTACAGACAAATTTAACCCAGCCAACGAACTTGGAGACGGCAGCTTTGGCACTGTCTACTATGGTAAACTCCGAGATGGACGTGAGGTTGCAGTTAAACGATTGTTTGAAAATAACGTTAAAAAAGTTGAGCATTTCCTAAATGAAGTTGAGATCCTTACCCGTTTGTGCCACCCACATCTTGTCACTCTTTATGGATGCACCTCTCGACGAAGCCGTGAACTCTTGTTGGTTTATGAGTTCGTACCAAATGGTACAGTCGCTGATCATCTTCATGGCATCCAAGCAAGACCGGGTGAGCTTCCATGGCTCACAAGGTTGAAGATTGCCATAGAGACAGCAAGTGCTCTGGCTTTTCTCCATGCTTCTAAAACCATCCACCGCGATGTTAAAACCACCAACATTCTCGTTGACAACAACTTCAACGTTAAAGTTGCCGATTTCGGACTGTCTCGACTTTTTCCGACGCAAGCGACACATGTTTCAACTGCTCCACAAGGAACTCCTGGCTATATTGATCCAGAGTATTATGAATGTTATCAACTTACGAGTAAAAGCGACGTTTTTAGCTTTGGAGTTGTGTTGGTTGAGCTGATATCTTCAAAGCCAGCAGTTGACATCACAAGGCACAGAGATGAGATTAACCTGTCGACGATGGCGATGAACAAGATCCAAAATGACGAATTAGACGACTTCGTAGATCCATGTCTTGGATTTAAAACAGATAAAAGGATCAGAGACATGATATGTAGAGTAGCAGAGTTGGCATTTCAATGCCTGCAAAGTGTGAGGGATACGAGACCATCAATGTTGGAGGCTTTAGAAATTCTAAAGAATATAGAGAGTAGAAGTTGTGGGAAAGAGAAGGGACAATCCCCAGATTCTGTGATTGTGCCTTGGATTAGCAAAACTTCAACACCAAATGGTAGTGGGTGAGTTATTTATTGATGGTTTCATGGTAAAATAAAATAGATGCTATGATGCTAAACTTTCCAAAAGCACTTCCTTCTCTGTAGTTTCTGGAAAAACTACACCACAACTGGAAAACTGTCTTGTAATTTCTAGAAAAACTATATTAATTGTTTATATATTTATAATATAAGTGTTATATTGATTAATAGTTTAA 2320 40.26 MKIYLKPRNSTFFIIFIAIHLSPCFNEGALDAFEVCGESYNCGELVNIKYPFWGNKKQKSCGRQEFKLNCRKNQTTTIYINSVEYNVLKINQSNNGMRIARSDLFENYCPENEIQVATMDAHLFAYASNNQNISVWYNCSGENYIPTPKRYKFWCSGKWGKLGRANYAFESSAANRNMEKGECTMNIEVMVTIDLLKEGIKGGKSLVEKAVKWGFDVEYGNWYKEACNECNESGGKCGGNKTYPFYCICKNGVANPYDCKAALPPPALKIKGSNDNWKKVVIGVGSGFGGIVITSLIFFIRLRLNKKKHFRASSSILLQNNSRDRLMKELEKGENYITVPLFSYQELVQATDKFNPANELGDGSFGTVYYGKLRDGREVAVKRLFENNVKKVEHFLNEVEILTRLCHPHLVTLYGCTSRRSRELLLVYEFVPNGTVADHLHGIQARPGELPWLTRLKIAIETASALAFLHASKTIHRDVKTTNILVDNNFNVKVADFGLSRLFPTQATHVSTAPQGTPGYIDPEYYECYQLTSKSDVFSFGVVLVELISSKPAVDITRHRDEINLSTMAMNKIQNDELDDFVDPCLGFKTDKRIRDMICRVAELAFQCLQSVRDTRPSMLEALEILKNIESRSCGKEKGQSPDSVIVPWISKTSTPNGSG 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38484467 38487413 - XM_039038439.1 Bhi08g01245 41578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01245 660 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 643 IPR044652 -
Bhi08g01245 660 SUPERFAMILY Protein kinase-like (PK-like) 336 630 IPR011009 -
Bhi08g01245 660 SMART serkin_6 354 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi08g01245 660 Pfam Wall-associated receptor kinase C-terminal 168 251 IPR032872 -
Bhi08g01245 660 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Bhi08g01245 660 Gene3D Phosphorylase Kinase; domain 1 326 430 - -
Bhi08g01245 660 Gene3D Transferase(Phosphotransferase) domain 1 431 640 - -
Bhi08g01245 660 Pfam Wall-associated receptor kinase galacturonan-binding 36 101 IPR025287 GO:0030247
Bhi08g01245 660 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 12 643 - -
Bhi08g01245 660 CDD STKc_IRAK 360 629 - -
Bhi08g01245 660 Pfam Protein kinase domain 357 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi08g01245 660 ProSiteProfiles Protein kinase domain profile. 354 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01245 - - - csv:105436377 1028.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01245 Bhi-Chr8:38484467 Bhi08g01256 Bhi-Chr8:38656998 0 dispersed
Bhi08g01245 Bhi-Chr8:38484467 Bhi08g01255 Bhi-Chr8:38656870 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g290 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi08g01245 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000799 2 5 1 3 2 2 3 4 2 2 2 2 4 3 3 4 2 1 3 2 3 1 2 3 1 3 1 1 3 3 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87950 PF00069 Pkinase 1.20E-46 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi08g01245 Bhi_Chr08 FPKM 5.685877 7.811809 7.341614 7.161257 2.911954 3.15095 2.870031 10.010067 8.911086 9.422515