Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01267 ATCAAGGGAGAAAAAGAAGAAAAAAGAAAAGGAAAAAAGAAAGTGAAAAAAGATGAACGGCTCGAAAATTATATATATTTATATTGGCGGCATAGAGCCCAAATCCGAACCGGATCGTCCTCACTTCCAATCTCTTCTCGGTGCTTCTTTTCGAGCTGTGCTGACGGAGATCGTCAAAGGATTTCCACTCGCACAACCTCCCAAAGCGAAGGCCCTCCATGTTTTGATTGCTCATGTTGTCTCGCCGATTTTTTCTTCCGATCATTGTTTGCTGCTTCTGATTCTCCTTTTCTCTCGTCAAGATTGATTGAGTTTACTGTATCAATTTTGGGCCTCATCGGTCTTGTACTCTGTTCTATAATCACATATTATAAGAAAACTAGACTAGGGTTACAAGTTTTTTCTTCTTTTGTTTTATTCTTCTTCCCTTATATAGTTTCAATTGATTGTAGCTTTGGGTTCCATGTTAATGGATTTTCCCTTCCCAGTATTGTATTATTGACGTTTATATGATTGCTATCTTCTCGTTTGTTTTTTTTTTTTCCCTTTCTTGATATGATTTTCTACGGGGAAAAGGTGTGAAAAAAATATAGAAAAAAAAAAAGAGAAAAGAATTGGTAAAAATTATCATCAAGCAATATATTCTTGACATCCCCTTTTCTTAATAAAAAAAAGAGAGAGCGAGAGAGGAAAATAAAAACGAGACTGTAGAACTTTGTATATTACTTTTGAATGGGGAGCCCTGCATTAAGTGGCCGGAATAATGGGCAGCAGCGATTAGGCATTACCGATCCCATTTCGTTGAGTGGGCCGACGGAGTACGACGTGATAAAGACTCGCGAACTTGAAAAGTATTTGCAAGATGCTGGATTGTACGAAAGTCAGGAGGAAGCCGTGAGTAGAGAGGAAGTTCTTGGGAGACTAGACCAGATTGTGAAGATTTGGGTTAAATCAATTAGTCGTGCAAAGGGGTTGAATGAGCAACTGGTACAAGAAGCCAATGCTAAGATTTTCACGTTTGGTTCATATCGTTTAGGGGTACATGGCCCTGGTGCAGATATTGATACGCTGTGTGTGGGACCTAGACATGCAACACGTGAAGAAGACTTTTTTGGTGAGCTACATAAAATGCTGTCAGAGATGCCTGAAGTATCTGAGTTACATCCTGTGCCTGATGCTCATGTTCCTGTGATGAGATTTAAGTTTTCCGGGGTTTCTATTGATCTTCTCTATGCAAAATTGTCACTTTGGGTTATTCCTGAAGACTTGGATATATCTCAGGATTCGATACTTCAAAATGCAGATGAACAGACAGTTCGTAGTCTAAATGGTTGTCGAGTTACTGATCGAATTTTGCGGTTAGTTCCAAATATTCAGGTTGTGAATCAAAACTTGCCTAGATGTTTTTATCTCTTTTTCTCATTAACTTTGTTCATTCTTAAAGTTCGGTTGATTTATGAAGTGCAGAGTTTTCGAACAACATTGAGATGCATGAGATTTTGGGCAAAACGCCGAGGTGTTTATTCCAATGTTTCGGGGTTTCTTGGTGGTATAAACTGGGCATTGCTTGTTGCTCGGATATGCCAACTATACCCCAATGCATTGCCAAATATGCTTGTGGCTCGTTTTTTCAGGGTCTTCACCCAGTGGCGCTGGCCAAATCCTGTTATGCTTTGTGCTAATGAAGAAGGATCTCTTGGACTTCCAGTTTGGGATCCAAGGAGAAATCCGAAGGATAGATACCATTTAATGCCTATAATTACTCCTGCTTATCCTTGTATGAATTCTAGCTACAATGTTTCGGCAAGCACTTTGCGTATTATGACTGAAGAATTTCGAAGGGGACATGATATTTGTGAGGTTATGGAAGAAAATAAGGCCGATTGGGACACACTTTTTGAGCCTTACCCCTTCTTCGAAGCATACAAAAACTACTTGCAAATAGACATTACTGCAGAAAATGATGATGACCTGAGAATTTGGAAAGGTTGGGTTGAATCTCGCCTTCGCCAACTGACATTGAAGATCGAAAGACATACGTATAACATGCTTCAGTGCCATCCACATCCAGGAGATTTTTCTGACAAATCCAGACCTTTCCACCATTGTTATTTCATGGGTTTGCAGCGAAAACAAGGAGTTCCTGCAAGTGGGGGTGAACAGTTTGATATAAGGTTGACAGTTGACGAATTTAAACGTTCTGTCAATGTATATACACAGCGGAAGCGTGGGATGGAGATTTATGTCTCCCATGTGAAAAGGAGGAGTATACCAAATTTTGTTTTCCCGGGTGGAGTTCGACCTTCGCGTGCATCAAAATTGACTTGGGATAGTAGGCGTAGTTCAGAACTAAAAGCTTCTGACAGTACTCAAGTAGACAGCCCATCTGAAGTTACAGGAAGTTTAGATGGGATAGATGATAGAAGGAAAAGAACGCGTATTGATGATAATGCAAATACTAACTTGAGAAATGGAGAGTGCTTGGCTGCTGCTCATTCCCACCTTGAGGAAGTTCATGAAGTCTGCCAAGTCAGCAACACTAGCTCATGTTCCATTAAGGATGCAAATTTTATTCCCACCAGTGCAGATAACTTAGAAAATCTGGCAGATGTTTCCCCTCAGAACAATGGAGATCATGGATTGATAGGAGTTACTCGCTCCACAAACATTGTACCTGTGGCTACTAATACATTAAACTGCAAAGAAGCAGAAAAGCTGGCAATTCAAAAAATTCTGTCCGACTCATATAACTCTCATCAAGATTTTCCTTCTGAGCCTGAAGAGCTGGACGATTTTGATTATAAACAAGCAGCTAAAGATTTTGGGGCTACTAAGCAAGGTAGCCCTATGAGGTCTTCGGATGCAAACACGTCTTCTATAGTAGTGCCTATGGTATCTTGCAATGAAGCACGCCAGTCAAGTTCTTATTCTAATGGGGGCTTAGAGGAGCTTGAGCTTGCTGAGGTTGTGGCGCCATTGTCAACTGGGACCGCTCCTGCACCTGTAGCTGAGCGAAAGCCAATTATCAGGTTGAGCTTCACTTCCTTGGGCAAAGCTGGTAAAAGCTCGTAAAGAAGGCTTCTTCCCTTCCCAAAAGCAGCTCGAGAGAGCATCCCTCTAATCTGTTATGTACTAGGCGATGTCCTGCCGGTCGATTTTCTTTTCATGTAACTCTTGACCCTTAATAATATAAAAGGAAAAAAAAAAAGAAAAAAAAGGTCCTAAGTTTTTATGTAATTTGTATAACGGGCTTGAAGGGCCCCATGTGCCAACAGTTCTACAAATGTACTAGTCGGTGTATGCCTTCTTTTTTTTTTACCGTGTTAATACAGATGATAGCTTCTATTATTTCTTCTAAA 3359 40.43 MGSPALSGRNNGQQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKSISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHKMLSEMPEVSELHPVPDAHVPVMRFKFSGVSIDLLYAKLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDRILRLVPNIQVVNQNLPRCFYLFFSLTLFILKVRLIYEVQSFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVARICQLYPNALPNMLVARFFRVFTQWRWPNPVMLCANEEGSLGLPVWDPRRNPKDRYHLMPIITPAYPCMNSSYNVSASTLRIMTEEFRRGHDICEVMEENKADWDTLFEPYPFFEAYKNYLQIDITAENDDDLRIWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSRPFHHCYFMGLQRKQGVPASGGEQFDIRLTVDEFKRSVNVYTQRKRGMEIYVSHVKRRSIPNFVFPGGVRPSRASKLTWDSRRSSELKASDSTQVDSPSEVTGSLDGIDDRRKRTRIDDNANTNLRNGECLAAAHSHLEEVHEVCQVSNTSSCSIKDANFIPTSADNLENLADVSPQNNGDHGLIGVTRSTNIVPVATNTLNCKEAEKLAIQKILSDSYNSHQDFPSEPEELDDFDYKQAAKDFGATKQGSPMRSSDANTSSIVVPMVSCNEARQSSSYSNGGLEELELAEVVAPLSTGTAPAPVAERKPIIRLSFTSLGKAGKSS 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38964235 38971312 - XM_039038352.1 Bhi08g01267 41600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01267 779 Pfam Nucleotidyltransferase domain 82 166 IPR002934 GO:0016779
Bhi08g01267 779 PANTHER POLY A POLYMERASE 239 707 - -
Bhi08g01267 779 PANTHER POLY A POLYMERASE 1 227 - -
Bhi08g01267 779 Gene3D Poly(A) polymerase predicted RNA binding domain 393 508 - -
Bhi08g01267 779 SUPERFAMILY PAP/OAS1 substrate-binding domain 244 391 - -
Bhi08g01267 779 Gene3D Beta Polymerase, domain 2 49 205 IPR043519 -
Bhi08g01267 779 Gene3D - 234 392 - -
Bhi08g01267 779 Pfam Poly(A) polymerase predicted RNA binding domain 394 453 IPR007010 GO:0003723|GO:0043631
Bhi08g01267 779 Pfam Poly(A) polymerase predicted RNA binding domain 454 525 IPR007010 GO:0003723|GO:0043631
Bhi08g01267 779 MobiDBLite consensus disorder prediction 1 23 - -
Bhi08g01267 779 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 392 518 IPR011068 GO:0003723|GO:0016779|GO:0031123
Bhi08g01267 779 MobiDBLite consensus disorder prediction 529 560 - -
Bhi08g01267 779 CDD NT_PAP_TUTase 57 211 - -
Bhi08g01267 779 Pfam Poly(A) polymerase central domain 239 391 IPR007012 GO:0004652|GO:0043631
Bhi08g01267 779 Pfam Poly(A) polymerase central domain 17 221 IPR007012 GO:0004652|GO:0043631
Bhi08g01267 779 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 227 - -
Bhi08g01267 779 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 239 707 - -
Bhi08g01267 779 MobiDBLite consensus disorder prediction 1 21 - -
Bhi08g01267 779 SUPERFAMILY Nucleotidyltransferase 17 210 IPR043519 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01267 K14376 PAP; poly(A) polymerase [EC:2.7.7.19] - csv:101217340 1357.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01267 Bhi-Chr8:38964235 Bhi09g00468 Bhi-Chr9:10087646 0 dispersed
Bhi08g01266 Bhi-Chr8:38964235 Bhi08g01267 Bhi-Chr8:38964235 0 tandem
Bhi08g01267 Bhi-Chr8:38964235 Bhi08g01268 Bhi-Chr8:38964235 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g270 Blo04g00834 . . . . . . . Cmo13g01043 . . . . . . Cpe20g00138 . . . . . . . . . . . . . . . . . . . Lsi02g00215 Csa01g00698 Chy12g01415 Cme12g01849 . . . . . Bpe15g00533 Bma03g00902 . . . . Cma13g01005 . Car13g00840 Car18g00050 Cpe09g01126 . Bhi08g01267 Tan05g2221 . Lac10g0269 Hepe07g2369 . . Cla04g01067 Cam04g1110 Cec01g1624 Cco01g1671 Clacu04g1136 Cmu04g1119 Cre01g1420 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003713 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 5 4 4 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi08g01267 Bhi_Chr08 FPKM 17.670214 22.298485 5.681542 6.512801 9.629725 9.960172 8.488045 7.158636 8.18714 10.788177