Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01290 TCGTCACGTCGTTTTACAATCACTACTCCCAAAAACCCACAATACCAAAAAAACCCAACCCCCTCTCCCCAGAATTCCACGCCCCTTTCTTCCTTTTCTTTTCTTCATCTTCTTCTTCCCTTCTCTCCACGCTTTCCCTTTCCATTTCATTATATCTTACATTCCATAACACTTAACCATGTGGATGATGGGTTACAATGACGCTCCAGATCATTTTAACTTTCCTTCTGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTCGTTCCTCGCCCTCTCCATTCTTCTTCTTCTTCTTCTTCTTCCTCCATTAATACTAATCCTCCCTTCAATCTCATCCACACAAACGATTTCTTCTCCCAATTTCATCACATGGCGACAGTAACTGATCAGAATAAGAGAGAGTTGAACAATGTGACGCCGTCGCCGCCTGTGGTAGTGAGCTCGCGGTGGAATCCGACGCCTGAGCAGTTGAGAGTGCTGGAGGAATTGTATCGGCGGGGGACTCGAACCCCGTCCGCTGATCAAATTCAACATATCACTGCTCAGCTTCGTCGTTACGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGAGAGCGACAGAAACGCCGTCGCCAGATGGAATCCGCCATCTCTGCCGCTGACCTCGATATCCTTGAAAGGAAAGATTCAGGGTCGGGCAGGACAGTGTATGAAGAACAGACCAAAAACTGGATGCCCTCTACAAACTGCAGTACACTTCCTGAGGAATCTGTTCCAATTCAAGGGGCAGCAAAAAGTAGTGTAATGGGAGAAGGAGATTGCAGGACAGAAAACGAATGGATTCAGTTTGAGGAATTGCACCAAATAAGAAATAACAACACCACCAACAACGACAACTTTGCTGAAAAGAATAGCAATAACATCAACAACAACAATAACAACAATCCAGCCTCCTTGCAATTGATGCATTGTCCGGCAGCCGCTCTCCGCAATGGCAGCGGTGGTGGTGGAGGCGGTGGCCAACTGATGATGAACATTGCCCCCATCACCACCACAGCCACAGTGACAACAATAATGCATCCAAAATCTCATAGAAGAAGTAATTTTAATACTGTTGGGGTTGAAGAATCGGAAGAAATAGGAGGAGAAGAAGAAGAAGGGTGTGGAGAATCTGAAACCCTACAACTTTTTCCATTATGCAGTGAGACAAGAAATGGAGAGATTATTGGAGTCAAAAATGGGTGTGAAACAGTGGAAAATTCAAGCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCTTTGAAGAATTGAACCTTTTTTTTATTTTAGCTGCTTCACATCTAGGGTTAATTACATTAGAGTGTTTAAAGTAAAGTTCTTGTAGTTACTATATAGATTCTTGGTTTCTTTAATTCCCTCCCAACTTTTCTATTTACGTACGTAAAAGTTGATGGGGTTTGTGTTTTAAGATGTTTTATGGATGGATATTGGACAACACTTTCATTCA 1526 42.4 MWMMGYNDAPDHFNFPSDNSFNSRKLRPLVPRPLHSSSSSSSSSINTNPPFNLIHTNDFFSQFHHMATVTDQNKRELNNVTPSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAISAADLDILERKDSGSGRTVYEEQTKNWMPSTNCSTLPEESVPIQGAAKSSVMGEGDCRTENEWIQFEELHQIRNNNTTNNDNFAEKNSNNINNNNNNNPASLQLMHCPAAALRNGSGGGGGGGQLMMNIAPITTTATVTTIMHPKSHRRSNFNTVGVEESEEIGGEEEEGCGESETLQLFPLCSETRNGEIIGVKNGCETVENSSMNSTNLTPLQFFEFLPLKN 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39357629 39360794 - XM_039037862.1 Bhi08g01290 41623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01290 383 Pfam Homeodomain 90 149 IPR001356 GO:0003677
Bhi08g01290 383 MobiDBLite consensus disorder prediction 33 47 - -
Bhi08g01290 383 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 52 383 - -
Bhi08g01290 383 SUPERFAMILY Homeodomain-like 90 156 IPR009057 -
Bhi08g01290 383 Gene3D - 88 149 - -
Bhi08g01290 383 CDD homeodomain 91 151 IPR001356 GO:0003677
Bhi08g01290 383 MobiDBLite consensus disorder prediction 24 47 - -
Bhi08g01290 383 SMART HOX_1 87 154 IPR001356 GO:0003677
Bhi08g01290 383 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 52 383 IPR044555 GO:0003700|GO:0099402
Bhi08g01290 383 ProSiteProfiles 'Homeobox' domain profile. 95 150 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01290 - - - csv:101209268 520.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi02g00135 Bhi08g01290 CCT
Bhi02g00135 Bhi08g01290 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00872 Bhi-Chr3:16214180 Bhi08g01290 Bhi-Chr8:39357629 1.28E-27 dispersed
Bhi03g00873 Bhi-Chr3:16214180 Bhi08g01290 Bhi-Chr8:39357629 1.33E-27 dispersed
Bhi04g00375 Bhi-Chr4:9164651 Bhi08g01290 Bhi-Chr8:39357629 4.59E-28 dispersed
Bhi09g02871 Bhi-Chr9:75625226 Bhi08g01290 Bhi-Chr8:39357629 7.19E-14 transposed
Bhi10g00633 Bhi-Chr10:13739913 Bhi08g01290 Bhi-Chr8:39357629 2.09E-29 transposed
Bhi11g02705 Bhi-Chr11:72529669 Bhi08g01290 Bhi-Chr8:39357629 9.63E-15 transposed
Bhi02g00135 Bhi-Chr2:2560364 Bhi08g01290 Bhi-Chr8:39357629 1.45E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g212 . . . Bda15g00511 Bpe12g00698 . . . Cmo13g01029 Cmo18g00054 . Cma11g00311 . Car11g00287 Sed12g2115 Cpe20g00149 Cpe04g01371 Bhi02g00135 Tan09g1827 Cmetu02g0991 . Hepe09g0388 . . Cla06g01422 Cam06g1576 Cec06g1636 Cco06g1628 Clacu06g1538 Cmu06g1492 Cre06g2301 Cone2ag0760 . . . Lsi02g00230 Csa01g00712 Chy12g01399 Cme12g01833 Blo13g00175 . . . . . . Bma08g00054 Sed08g2754 . Cmo11g00316 Cma13g00993 Cma18g00071 Car13g00827 Car18g00062 Cpe09g01115 . Bhi08g01290 Tan05g2195 Cmetu12g1142 Lac10g0287 Hepe07g2356 . . Cla04g01050 Cam04g1093 Cec01g1608 Cco01g1654 Clacu04g1119 Cmu04g1103 Cre01g1402 Lsi06g01287 Csa01g00431 Chy02g02313 Cme02g01686
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01290 CCT,ECH 1 198 Wox Gene Family AT3G18010 54.3 5.2e-47 186.0
Bhi02g00135 CCT,ECH 1 165 Wox Gene Family AT3G18010 54.4 4.2e-41 166.4
Bhi11g02705 . 18 242 Wox Gene Family AT3G03660 52.6 5.5e-50 195.7
Bhi11g00265 . 1 275 Wox Gene Family AT4G35550 50.3 7.4e-70 261.5
Bhi11g00264 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi11g00266 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi09g02871 . 101 290 Wox Gene Family AT4G35550 57.4 1.1e-57 221.1
Bhi04g00375 . 5 168 Wox Gene Family AT1G46480 62.2 1.0e-49 194.1
Bhi03g00342 . 1 388 Wox Gene Family AT2G33880 50.1 2.5e-66 250.4
Bhi08g01290 CCT,ECH 1 198 Wox Gene Family AT3G18010 54.3 5.2e-47 186.0
Bhi02g00135 CCT,ECH 1 165 Wox Gene Family AT3G18010 54.4 4.2e-41 166.4
Bhi04g00375 . 5 168 Wox Gene Family AT1G46480 62.2 1.0e-49 194.1
Bhi03g00342 . 1 388 Wox Gene Family AT2G33880 50.1 2.5e-66 250.4
Bhi11g02705 . 18 242 Wox Gene Family AT3G03660 52.6 5.5e-50 195.7
Bhi11g00265 . 1 275 Wox Gene Family AT4G35550 50.3 7.4e-70 261.5
Bhi11g00264 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi11g00266 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi09g02871 . 101 290 Wox Gene Family AT4G35550 57.4 1.1e-57 221.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004252 3 1 2 3 2 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1703 PF00046 Homeodomain 1.50E-19 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi08g01290 Bhi_Chr08 FPKM 0.0 0.0 0.0 0.0 1.887122 0.0 1.563407 0.0 0.0 0.0