Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01299 GAATGTATTCTCAGGTCATCAGGATCTTTCTCGTAATTCCACAGGCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAAACTCAATCCCAATTCAGATTAGAATGCAACTGCAAACTCGTAGACTTCAGTTAATTTTCCTAATTTTATGTCTATGTTCTATCTTCATCAACGCTCGTCCCTTTCTCATCGTCATCTCTCAAGATGACCTCAAGGATGGTGCCCCGCCGGACGACTCCTCCGATTCCGCCAACTCCGACTCCGCCGAGTGGGACGAGTTCGGCGAACCCGAATCTCAAAACTCCGCCCTCGAGCTTGACCCCGGTTCTTGGCGCCCCATTTTTGAACCGGATTCCCCCGCCTCCGACGCGCCCGACGATCTGTACTACACTGCTTTAGGGAAAATGATGTCCGCGGTTAGCTCCGGTGACCTGAGGTTGATGGAGGATGCTGTAGCGGATATTGATCAAGCTGCTGCGGAGAGTGGGGATCCGCACGCGCAATCGGTTCTAGGGTTATTGTATGGAATGGGGATAATGAAGGAGACTAATAAGGCTAAAGCGTTTATGTATCACCATTTTGCCGCTGAAGGGAATAAACAATCTAAGATGGCTCTTGCTTATATTTACTTCAGGCAAGAAATGTATGAGAAAGCAGTCAAGCTTTATGCTGAATTAGCAGAGGTAGCCATTAATAGTCTATTAGTTTCCAAGGATTCTCCAGTAATTGAACCTGTGAGGATCCATAATGGTGCTGAAGAGAACAAGCAGGCCTTGAGAAAGTCTCGAGGAGAGGAGGACGAGGACTTCCAAATTTTGGAATATCAGGCGCAGAAGGGTAATGCTGGAGCTATGTATAGAATTGGACTATTTTACTACTTTGGACTTAGAGGGTTGAGGCGTGATCATGCTAAAGCATTGTCCTGGTTTTCCAAGGCCGTGGAGAAAGGTGAACCGAAGTCTATGGAACTACTTGGAGAGATATATGCAAGGGGGGCCGGAGTCGAAAGGGATTATACTAAGGCACTTCAATGGCTGACTCGTGCATCCAAGCAGCCGTCATTTACTGCTTATAATGGCATGGGATATTTATACGTTAAGGGTTATGGAGTGGAGAAAAACTATACCAAGGCCAAGGAGTACTTTGAGAAAGCTGCCGAAAACGAGGAGTCTGGTGGTCATTATAATCTAGGAGTTATGTATCTTAAAGGCATTGGAGTAAAGAGAGATGTGAAGAAGGCATGTACTCATTTTATAATGGCTGCAAATGCTGGACAACCAAAGGCATTCTACCAGCTGGCAAAGATGTTTCATACTGGTGTTGGGCTCAAGAGGAATATTCCTATGGCTAGTGCATTATACAAATTAGTTGCTGAACGAGGGCCTTGGAGTTCATTGTCTAGATGGGCATTGGAATCATATCTGAAAAGTGATATTGGCAAGGCATTCTTATTGTACGCAAGAATGGCTGAGCTAGGATATGAGGTGGCACAAAGCAATGCAGCATGGATACTTGACAAATATGGAGAACAAAGCATGTGTCTGGGAGAATCTGGCTTTTGCACGGATGCAGAAAGACATCAGAGAGCTCATTCTCTATGGTGGCAAGCTTCCGAGCAGGGCAACGAACATGCTGCTTTACTGATTGGGGACGCATATTACTATGGTCGGGGAACCGACGTAGATTATGATCGTGCTGCGGAAGCATACATGCATGCCAAATCCCAACTAAATGCACAAGCCATGTTCAACCTTGGTTACATGCATGAACATGGTCTGGGGCTTCCATTTGATCTTCACCTAGCCAAGCGTTACTATGACCAAGCTCTGGAACTTGATCCAGCTGCCAGGTTGCCTGTCAAGCTGGCCCTAGTAAGCTTGTGGTTAAGGAAGAATCATGCTGACAGTTTTCTGGTCCATGTGATTGATTCGTTGCCAGAAGTGTATCCAAAAATTGATGCATGGGTAGAGGATGTACTGTTGGAGGAAGGAAATGCAACAATTTTAACTCTATTTGCTTGCCTACTCACTGTTCTATATCTTAGAGAGCGACAACGGAGGCATGCAGCTGTTCGGGCGGCTGCAGCTGCTGCCGCTGCTGAGGCTGTGCCACTCCATCCAAATGACCATGTCCCTCCACAAAATTAAATCATTACCTGTACTTTTGATTGAATTGATCACTGCTCTTTTTTATCTTTTACTTTTCAATGAGGTATGAGAATCTTTTCTGCAACGTTATGTACAGGAAATTAGAACTCAACTGCGTAGAGAGGAAAGAGCTTTTGCGTTCTTGTGACTTTTACAACACAGAGTAGAGGAAGGATTTCAAAATGTTTATCACCTCGATTATAGAAAACAAAGATTTTTTTTATTTTTTTTTTGTGATTTATTGACGTGGCAA 2404 44.51 MQLQTRRLQLIFLILCLCSIFINARPFLIVISQDDLKDGAPPDDSSDSANSDSAEWDEFGEPESQNSALELDPGSWRPIFEPDSPASDAPDDLYYTALGKMMSAVSSGDLRLMEDAVADIDQAAAESGDPHAQSVLGLLYGMGIMKETNKAKAFMYHHFAAEGNKQSKMALAYIYFRQEMYEKAVKLYAELAEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEEDEDFQILEYQAQKGNAGAMYRIGLFYYFGLRGLRRDHAKALSWFSKAVEKGEPKSMELLGEIYARGAGVERDYTKALQWLTRASKQPSFTAYNGMGYLYVKGYGVEKNYTKAKEYFEKAAENEESGGHYNLGVMYLKGIGVKRDVKKACTHFIMAANAGQPKAFYQLAKMFHTGVGLKRNIPMASALYKLVAERGPWSSLSRWALESYLKSDIGKAFLLYARMAELGYEVAQSNAAWILDKYGEQSMCLGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTDVDYDRAAEAYMHAKSQLNAQAMFNLGYMHEHGLGLPFDLHLAKRYYDQALELDPAARLPVKLALVSLWLRKNHADSFLVHVIDSLPEVYPKIDAWVEDVLLEEGNATILTLFACLLTVLYLRERQRRHAAVRAAAAAAAAEAVPLHPNDHVPPQN 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39611073 39615375 + XM_039039069.1 Bhi08g01299 41632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01299 680 MobiDBLite consensus disorder prediction 38 85 - -
Bhi08g01299 680 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 659 IPR044623 GO:0030433
Bhi08g01299 680 Gene3D Tetratricopeptide repeat domain 67 195 IPR011990 GO:0005515
Bhi08g01299 680 Gene3D Tetratricopeptide repeat domain 215 599 IPR011990 GO:0005515
Bhi08g01299 680 Pfam Sel1 repeat 248 282 IPR006597 -
Bhi08g01299 680 Pfam Sel1 repeat 544 578 IPR006597 -
Bhi08g01299 680 Pfam Sel1 repeat 285 318 IPR006597 -
Bhi08g01299 680 Pfam Sel1 repeat 441 459 IPR006597 -
Bhi08g01299 680 Pfam Sel1 repeat 359 390 IPR006597 -
Bhi08g01299 680 Pfam Sel1 repeat 510 532 IPR006597 -
Bhi08g01299 680 Pfam Sel1 repeat 396 426 IPR006597 -
Bhi08g01299 680 Pfam Sel1 repeat 130 163 IPR006597 -
Bhi08g01299 680 Pfam Sel1 repeat 322 353 IPR006597 -
Bhi08g01299 680 SUPERFAMILY HCP-like 333 579 - -
Bhi08g01299 680 SUPERFAMILY HCP-like 114 193 - -
Bhi08g01299 680 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 659 - -
Bhi08g01299 680 SUPERFAMILY HCP-like 228 353 - -
Bhi08g01299 680 SMART sel1 247 283 IPR006597 -
Bhi08g01299 680 SMART sel1 508 543 IPR006597 -
Bhi08g01299 680 SMART sel1 356 391 IPR006597 -
Bhi08g01299 680 SMART sel1 284 319 IPR006597 -
Bhi08g01299 680 SMART sel1 392 427 IPR006597 -
Bhi08g01299 680 SMART sel1 320 355 IPR006597 -
Bhi08g01299 680 SMART sel1 544 579 IPR006597 -
Bhi08g01299 680 SMART sel1 130 165 IPR006597 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01299 K14026 SEL1, SEL1L; SEL1 protein - csv:101221047 1262.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00680 Bhi-Chr4:16008349 Bhi08g01299 Bhi-Chr8:39611073 2.05E-07 dispersed
Bhi04g00681 Bhi-Chr4:16008362 Bhi08g01299 Bhi-Chr8:39611073 2.05E-07 dispersed
Bhi08g01299 Bhi-Chr8:39611073 Bhi08g01300 Bhi-Chr8:39611073 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi08g01299 Bhi_Chr08 FPKM 4.156086 4.572415 1.668408 1.843068 4.549426 4.767559 3.241454 0.0 0.0 0.0