Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01328 TTCCTTCCCCACTTTATGGCTCTGGTCCGTGATCGCCGCCACTTGAACCTCCGCCTCCCCNACCTCTCCGACTGCCGTTCCCGCTTCCCTCTCCCCTCCCTCCCTCCANNCTGCCCCAGCCGCCCCTCCGCCCCCTCCGCCATCTCCTCCTCCGACCTCGACAAGCTCCAAGTCCTCGGCCACGGCAACGGCGGCACCGTCTACAAAGTCCGCCATAAACGCACCTCCACCACTTACGCTCTCAAAGTCGTCCACGGCGACTGCGACCCCACCGTCCGTCGCCAAGTTTTCAGAGAGATGGAGATTCTCCGCCGTACTGATTCTCCTTATGTCGTCCAGTGCCATGGAATCTTCGAGAAGCCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATTCGCTCTTGAAAAAGAACTCCACCTTGTCAGAATCGACGCTCGCTCACGTATCGCGTCAAGTTCTTAACGGACTTCATTACCTTCATTCTCACAAAATCATTCATCGCGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAAATTGCTGATTTTGGAGTTAGTAAAATCATGTGCAGGACTTTGGATGCTTGTAATTCTTATGTCGGGACTTGCGCCTATATGAGTCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGAGATATTTGGAGTTTAGGACTTACTCTTCTGGAACTTTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCGACGCTGCCGGAGAATGCGTCGGAGGAGTTTCGCAGCTTTGTTGAGTGTTGCTTGCAGAAGGAATCAAGCAAACGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGGTCCGATAATCGATGACTCGGCAGTGGATTGAAGGGATTCCGGTTCCGAATCACTGGCAGTTTAAAAGATCCGGCCAAATTCTGAGATCTGTACATAAACTTGCGGAATTCGGATGAACTTTTTGTATATAATCCCTTTTCTTTTTCAATTTGAATCTTCATCTGTAGCTTCTCTGAATCTCCTCCAAATCAATCGAATCGAATCCCCAATTTCGGAGAATTTTTGTACCTTTTGGATTAAATTTTTTTTCTTCAATTAAAAAGATTAACA 1230 48.37 MALVRDRRHLNLRLPXLSDCRSRFPLPSLPPXCPSRPSAPSAISSSDLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSESTLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPENASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSDNR 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40376514 40377740 + XM_039040097.1 Bhi08g01328 41661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01328 319 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 313 - -
Bhi08g01328 319 ProSiteProfiles Protein kinase domain profile. 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi08g01328 319 SMART serkin_6 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi08g01328 319 Pfam Protein kinase domain 50 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi08g01328 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Bhi08g01328 319 CDD PKc_MAPKK_plant_like 47 309 - -
Bhi08g01328 319 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 313 - -
Bhi08g01328 319 Gene3D Phosphorylase Kinase; domain 1 34 128 - -
Bhi08g01328 319 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Bhi08g01328 319 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Bhi08g01328 319 Gene3D Transferase(Phosphotransferase) domain 1 130 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01328 K20604 MKK9; mitogen-activated protein kinase kinase 9 [EC:2.7.12.2] - csv:101203133 585.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02812 Bhi-Chr1:69891858 Bhi08g01328 Bhi-Chr8:40376514 1.50E-96 dispersed
Bhi08g01328 Bhi-Chr8:40376514 Bhi11g01601 Bhi-Chr11:46148486 1.22E-46 dispersed
Bhi08g01328 Bhi-Chr8:40376514 Bhi06g01629 Bhi-Chr6:46699942 1.06E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g168 . . . . . . . . Cmo13g01011 . . . . . . Cpe20g00165 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01809 . . . . . . . . Cma13g00976 . . . . . Bhi08g01328 . . . . . . Cla04g01028 Cam04g1070 Cec01g1584 Cco01g1633 Clacu04g1097 Cmu04g1081 Cre01g1381 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g01848 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 4.4e-136 481.9
Bhi02g01847 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 4.4e-136 481.9
Bhi06g01629 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.6 2.7e-125 446.0
Bhi06g01688 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.3 3.9e-108 389.0
Bhi06g01689 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.3 3.9e-108 389.0
Bhi02g01848 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 6.0e-133 471.5
Bhi02g01847 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 6.0e-133 471.5
Bhi06g01629 CCT 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.7 7.1e-118 421.4
Bhi06g01688 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 3.2e-110 396.0
Bhi06g01689 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 3.2e-110 396.0
Bhi11g01603 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi11g01601 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi11g01602 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi01g02812 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 66.3 1.2e-126 450.7
Bhi08g01328 . 46 319 MAP Kinase Kinase Gene Family AT1G51660 55.8 1.6e-83 307.4
Bhi01g02812 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 68.9 2.4e-129 459.5
Bhi08g01328 . 44 311 MAP Kinase Kinase Gene Family AT3G21220 54.9 5.3e-84 308.9
Bhi06g01688 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.7 2.2e-170 595.9
Bhi06g01689 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.7 2.2e-170 595.9
Bhi02g01848 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 6.7e-119 424.9
Bhi02g01847 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 6.7e-119 424.9
Bhi06g01629 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 56.4 6.3e-109 391.7
Bhi08g01328 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.4 6.7e-107 384.8
Bhi01g02812 . 69 335 MAP Kinase Kinase Gene Family AT1G18350 51.8 2.7e-76 283.1
Bhi08g01328 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 51.6 5.1e-80 295.4
Bhi08g01328 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 66.8 5.7e-114 408.3
Bhi01g02812 . 76 335 MAP Kinase Kinase Gene Family AT1G73500 52.5 7.2e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87967 PF00069 Pkinase 1.20E-65 CL0016 Bhi PK