Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01330 ATGAATCAAGAGGCGGTGTGCGAGGGGGACCACTTCCTTACGGCCCAAGCGATTAGCAAATGCGGAACCCAAAGCCACCCGCTTCCCTATAAATTGCCGGAAACCGCTTCGACCTCACTTCTCGCCTTTCCCAGCAAATTAAAAATCCCCATTTCTCTTTCAATTTCATCACCGGAGCCGGAGGACGATTACAATCACCGCCCTCTGTCGCCTTCTTCGCCATTTCGGAGTTCCTTCGATCAGAATATGAGCTCACATGTCCGAAATGTGCGGAAGGATAGGTCTAGATTTCCTGCATCAAGTGCTCGACAAGAGTGGGTAGCGAGAGGATCCACGACAACCACTACTACCACAACTACAACTACGACCACGGCTATTCCTGTGAATCAGCCATTGAACGTCAATTTGAATGATAATCGGAATGGGCTAGAGCTAAATTCTAGCCCTCCTCATCCAGTTTGTCGAGACAGAGGTAATCATGGTCCAAGGGTTCATGTGGGTCCTCGAAGGAATCAAAGAAAGGACAAGGAAAAAGATAAGGAGAAAAGTGGGGGTCAGGGTGAAAAGGAGTTGAGAATCTCCAACTTGCCTCAGCTAGTTCATGAAATTCAGGAAAAATTGATGAAGGGCACTGTTGAGTGCATGATTTGTTATGATATGGTGCGGAGATCTGCACCCATATGGTCTTGTTCAAGCTGCTTTTGCATTTTTCATTTAACTTGCATCAAGAAATGGGCTAGAGCACCCACTTCCACCGACTTGGTAGCTGAGAAGAATCAGGGATTAAATTGGCGTTGTCCTGGATGCCAATCTGTGCAGCTTACGTCTTCGAAGGAGATTCGATATGTTTGTTTCTGTGGTAAAAGGCAGGATCCCCCTTCTGACTTGTATTTGACACCCCATTCATGTGGGGAACCATGTGGCAAGCCACTTGATCGAGAGATGATGGTTGCTGGTGGAAGCAAGGAGGATCTTTGTCCCCATAATTGTGTCTTGCAGTGCCATCCAGGTCCCTGCCCTCCTTGCAAGGCATTTGCTCCTCCCCGTTTATGCCCTTGTGGCAAGAAGTTGATAACAACACGTTGTTCAGATAGGAAATCCACTTTAACTTGTGGTCAGCATTGTGAAAAACTCCTGGATTGTGGACGTCACTGGTGTGAAAAAATATGCCATGTGGGTACTTGTGATCCTTGTCAGGTTCAAGTTAGTGCCTCTTGCTTTTGCAAGAAAAAGAAAGAGCTTGTTCTTTGTGGAAGCATGACTTTGAAGGGTGAAATAAATACAGAAGATGGTGTTTTCCCCTGTAGTTCCATCTGTGGGAAGACTCTTAACTGCGGCAATCATGTCTGCCGTGAAATTTGTCATCCAGGACCCTGTGAAGGCTGTGATTTAATGCCTGACATGATTAAGACATGTTATTGTGGTAAAACACGATTGCAGGACGAACGGACAAGTTGTTTGGATCCAATCCCAACATGTTCTGAGCTCTGTGAGAAACTATTACCTTGTGGGAAGCATCATTGTAAGGATGTCTGTCACGCTGGAGATTGTGCACCTTGCTTGGTTCAAGTTGTGCAAAAATGCCGGTGTGGATCAACTTCTCGAAATGTGGAATGCTACAAGACTTCCAGCCCAACTGACATATTCACTTGCGAAAAGCCATGCGGGTGGAAGAAGAATTGTGGAAGGCACAGGTGCAGTGAGAGGTGCTGTCCTCTATCAAACTCCAGCTATAATCATTTAGGAGATTGGGATCCACACTTTTGTGTAATGAGATGTGGGAAGAAACTAAGGTGTCGCCAGCACTCTTGTCAATCACTGTGTCATAGTGGCCATTGCTCTCCATGTCCCGAGACAATCTTCACAGACTTGACATGTGCTTGTGGTAAAACTTCAATTCCTCCACCCTTGCCTTGTGGAACACCGCCCCCATCATGTCAACTGCCATGTTCCGTCCCTCAGCCATGTGGCCATTGTTCTACTCATAGCTGTCACTTTGGTGACTGCCCGCCTTGTACAGTTCCAATAGCCAAGGAGTGCATCGGTGGACATGTAGTTCTAAGGAACATTCCTTGCGGTTCAAGGGACATCAGATGCAACAAGCTATGTGGGAAAACTAGGCAGTGTGGGATGCATGCCTGCAACAGAACTTGTCACCCGCCACCGTGTGACACTGCTGCTGGATCTGATTTGGGTCAGAAAACTTCCTGTGGACAGACATGTGGTGCGCCTCGAAGAGATTGTAGGCATACATGTACTGCGCCATGTCACCCATCTGCTCCTTGCCCCGATGCAAGATGTGAATTCCCTGTTATCATCACTTGTTCATGTGGCCGAATAACAGCATCTGTTCCTTGCGATGCTGGAGGGAGCAGTATTGGTTTCAATACTGATACTCTGTATGCTTCAATTATTCAAAAATTACCTGTTCCGCTTCAACCCATTGAGGCAACTGGCAAAAAGATTCCACTAGGACAGAGAAAACTGACATGTGATGATGAATGCTCTAAGCTAGAGAGGAATCGGGTTCTTGCAGATGCTTTTGATATCAATCCCCCAAATTTGGATGCCCTTCACTTCGGCGATAGTTCTGCTTCTGAATTGCTTGCAGACCTCTTTAGACGTGATTCAAAATGGGTATTGGCTGTGGAGGAGAGATGCAAATTCCTGGTCCTTGGGAAGAATAGAGGAACAATGAGTGGCCTTAAAGTTCATGTTTTCTGTCCAATGGCCAAGGATAAGAGAGATGCTGTCAGGCTGATTGCTGAGAGGTGGAAGCTTGCGATCAATTCGGTTGGCTGGGAGCCCAAACGTTTCATTACAATTCATGTTACTCCTAAATCAAAAGCTCCGCCTCGGGTGCTTGGTATTAAGGGCTCAACCACCACCAGTACTCTATATCCACCATCTTACGATCCTTTAGTAGATATGGATCCTAGGCTAGTTGTTTCTTTTCCAGATTTGCCTAGGGAATCAGACATAAGTGCATTAGTCTTAAGGTTTGGTGGGGAATGTGAATTAGTATGGTTGAACGACAAGAATGCTTTGGCTGTCTTCAGCGATCCTGCTCGAGCAGCTACTGCAATGAGAAGGTTGGATCATGGGACAGCGTATCATGGAGCCAGTGCTCTTCAGAATGGTGGTGCATCAGCATCATCTAATGCAAATGCTTGGGGAGGAGGGGAGAATGCAAAGGAAGGTGGAGCATCAAAGAGTAGTAATCCATGGAAAAGGGTCGTAGTTCAGGACTCTAGTTGGAAGGACACTTCATGGGGCGATGAAGAATGGTCCGGTTCATCTATCGACGTTCAGGCATCCGTATGGAAAAGAGAAGCTCCACTTCCTGCTTCACTTAATCGGTGGCATGCGTTGGACACCGAATCTGCTGTGAGTTCTTCCACTCGATCTCCCGAACACAATATTGGCAATCGGGTTGGCCATTCCTCTTTAGGATCTGAATCAGGCACAAGTAGGAACCTGAGCTCTGCAGGAGGGATACAGGTTGTAACAGATGATGGAACAAACACGTCGGAAGTGGCAGATGATTGGGAGAAGGCTTATGAATGAAATGAGGGAAATAGTAGTATATCTGTAGCTGATAAATAAAATTAGCCTTAAGGTTTCTCCATCAATGGCTGGCCTTGTTCGGATCTTCGACGCAGCCTTCCTGTCCTTGAATTTGCATCTGTTGTCACTCAGTCAGAATGTGTTTCACGAGACGGTTCAATTTTGAAAGTAAGTTTGTAGGTAATACCTTGAGAGAATAATGATTGTAGAGTGTAGCTTTTACAGTACAATAGACATTTATATATTGCATAAAGTTGGAAGGTAAAACTGAAAATCTTTTTCTTCAGCTGCTGCTGCTGCTGCTTCTATGTACTGAAGGAGGCTTCTTATTTATCGAAGCATAACTTTCAGTAGTTGTGTCCTTTCCAGTTTTGGGGGGGAGTACAATACTATATCTTTTGTACTAATTCTTCAGAAAGACATGATATGTGAATTCTTTCACTGATAATGAAATTGGATCTTCTGTTTA 4036 45.54 MNQEAVCEGDHFLTAQAISKCGTQSHPLPYKLPETASTSLLAFPSKLKIPISLSISSPEPEDDYNHRPLSPSSPFRSSFDQNMSSHVRNVRKDRSRFPASSARQEWVARGSTTTTTTTTTTTTTAIPVNQPLNVNLNDNRNGLELNSSPPHPVCRDRGNHGPRVHVGPRRNQRKDKEKDKEKSGGQGEKELRISNLPQLVHEIQEKLMKGTVECMICYDMVRRSAPIWSCSSCFCIFHLTCIKKWARAPTSTDLVAEKNQGLNWRCPGCQSVQLTSSKEIRYVCFCGKRQDPPSDLYLTPHSCGEPCGKPLDREMMVAGGSKEDLCPHNCVLQCHPGPCPPCKAFAPPRLCPCGKKLITTRCSDRKSTLTCGQHCEKLLDCGRHWCEKICHVGTCDPCQVQVSASCFCKKKKELVLCGSMTLKGEINTEDGVFPCSSICGKTLNCGNHVCREICHPGPCEGCDLMPDMIKTCYCGKTRLQDERTSCLDPIPTCSELCEKLLPCGKHHCKDVCHAGDCAPCLVQVVQKCRCGSTSRNVECYKTSSPTDIFTCEKPCGWKKNCGRHRCSERCCPLSNSSYNHLGDWDPHFCVMRCGKKLRCRQHSCQSLCHSGHCSPCPETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCGHCSTHSCHFGDCPPCTVPIAKECIGGHVVLRNIPCGSRDIRCNKLCGKTRQCGMHACNRTCHPPPCDTAAGSDLGQKTSCGQTCGAPRRDCRHTCTAPCHPSAPCPDARCEFPVIITCSCGRITASVPCDAGGSSIGFNTDTLYASIIQKLPVPLQPIEATGKKIPLGQRKLTCDDECSKLERNRVLADAFDINPPNLDALHFGDSSASELLADLFRRDSKWVLAVEERCKFLVLGKNRGTMSGLKVHVFCPMAKDKRDAVRLIAERWKLAINSVGWEPKRFITIHVTPKSKAPPRVLGIKGSTTTSTLYPPSYDPLVDMDPRLVVSFPDLPRESDISALVLRFGGECELVWLNDKNALAVFSDPARAATAMRRLDHGTAYHGASALQNGGASASSNANAWGGGENAKEGGASKSSNPWKRVVVQDSSWKDTSWGDEEWSGSSIDVQASVWKREAPLPASLNRWHALDTESAVSSSTRSPEHNIGNRVGHSSLGSESGTSRNLSSAGGIQVVTDDGTNTSEVADDWEKAYE 1188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40399182 40404842 - XM_039039259.1 Bhi08g01330 41663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01330 1188 SUPERFAMILY RING/U-box 203 273 - -
Bhi08g01330 1188 ProSiteProfiles Zinc finger PHD-type profile. 211 272 IPR019787 -
Bhi08g01330 1188 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 169 1139 - -
Bhi08g01330 1188 MobiDBLite consensus disorder prediction 105 146 - -
Bhi08g01330 1188 MobiDBLite consensus disorder prediction 70 85 - -
Bhi08g01330 1188 MobiDBLite consensus disorder prediction 54 192 - -
Bhi08g01330 1188 MobiDBLite consensus disorder prediction 1045 1076 - -
Bhi08g01330 1188 CDD RING-CH-C4HC3_NFX1 213 270 - -
Bhi08g01330 1188 CDD NF-X1-zinc-finger 435 478 - -
Bhi08g01330 1188 Pfam NF-X1 type zinc finger 664 673 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 Pfam NF-X1 type zinc finger 445 462 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 Pfam NF-X1 type zinc finger 328 343 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 Pfam NF-X1 type zinc finger 503 520 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 Pfam NF-X1 type zinc finger 381 399 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 Pfam NF-X1 type zinc finger 741 766 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 Pfam NF-X1 type zinc finger 561 572 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 Pfam NF-X1 type zinc finger 709 724 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 Pfam NF-X1 type zinc finger 593 617 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 CDD NF-X1-zinc-finger 646 694 - -
Bhi08g01330 1188 ProSiteProfiles Zinc finger RING-type profile. 214 270 IPR001841 -
Bhi08g01330 1188 SMART znfxneu3 599 618 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 SMART znfxneu3 445 464 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 SMART znfxneu3 326 344 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 SMART znfxneu3 656 674 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 SMART znfxneu3 709 739 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 SMART znfxneu3 503 522 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 SMART znfxneu3 381 400 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 SMART znfxneu3 748 769 IPR000967 GO:0005634|GO:0008270
Bhi08g01330 1188 CDD NF-X1-zinc-finger 371 419 - -
Bhi08g01330 1188 CDD NF-X1-zinc-finger 737 786 - -
Bhi08g01330 1188 MobiDBLite consensus disorder prediction 156 188 - -
Bhi08g01330 1188 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 169 1139 IPR034078 GO:0003700
Bhi08g01330 1188 MobiDBLite consensus disorder prediction 1045 1059 - -
Bhi08g01330 1188 MobiDBLite consensus disorder prediction 1129 1176 - -
Bhi08g01330 1188 CDD NF-X1-zinc-finger 593 632 - -
Bhi08g01330 1188 CDD NF-X1-zinc-finger 493 541 - -
Bhi08g01330 1188 CDD NF-X1-zinc-finger 303 364 - -
Bhi08g01330 1188 MobiDBLite consensus disorder prediction 1129 1188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01330 K12236 NFX1; transcriptional repressor NF-X1 - csv:101210254 2153.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02304 Bhi-Chr4:63341121 Bhi08g01330 Bhi-Chr8:40399182 1.10E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g162 Blo04g00860 . . . . . Bma06g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00250 . . . . . . . . . Bma03g00927 . . . . . . . . . . Bhi08g01330 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011037 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1711 PF01422 zf-NF-X1 1.20E+02 No_clan Bhi TF