Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01339 GACGAAATGCCCGAGAGAAATGTTGTGTCCTGGTCTGCAATCATTGTTGGGTTCGTCCAACATGGCCGACCCAACGAAGCCCTCTCTCTATTTGGCCGTATGCATTGCGATGGCACGATAATGCCTAACGAATTCACCCTGGATGAATCTCGAGGGCGTTAAGCCTGATAATTTTACATTTGCTAGTGTCTTTACTGGGTTGGCTGCTCTCTCTGAATTTAGGCTGGGGTTGCAAGTTCATGGACAACTTGTGAAATGTGGATACGGGAGTGATATTTGTGTAGGGAATTCCTTGTGTGATATGTACATTAAAAATCAGAAGTTGTTAGATGGTTTTAAAGCTTTTGATGAAATGCCTTCAAGTGATGTTTGCTCTTGGACCCAGATGGCTGCAGGGTGCCTCCAGTGTGGGGAACCAATGAAAGCACTCGAGATCATTTATGAGATGAAAAATGTCGGCCTGAGCCTAAATAAGTTCACTCTTGCAACTGCCTTGAATGCTTGTGCCAATTTGGCCTCCATGGAAGAAGGAAAGAAATTCCATGGATTGAGAATTAAACTTGGAACTGATATTGATGTTTGTGTTGATAACGCTCTACTTGATATGTATGCAAAATGTGGATGTATGACCAGTGCAAATGTCGTCTTTCGTTCGATGGATGAACGATCTGTTGTCTCGTGGACTACTATGATTATGGGATTTGCACATAATAGCCAAACAAAAGAAGCCCTTCAAATCTTCGATGAAATGAGGAAAGGGGAAGCTGAACCTAACCACATTACTTTTATTTGTGTTCTCTATGCCTGTAGCCAAGGAGGTTTCGTTGATGAAGCATGGAAATACTTCTCTTCCATGAGTGCTGACTATGGGATTTCACCTTCAGAAGATCACTATGTGTGTATGGTGAATCTATTAGGCCGAGCTGGGTGTATAAAAGAAGCCGAGGATTTGATCTTACGAATGCCGTTTCGACCTGGTTCATTAGTCTGGCAAACGTTGCTCGGTGCTTGCTTAGTTCATGGTGACTTAGAGACAGGAAAGCGAGCAGCAGAGCACGCGTTGAATTTGGATCGAAATGATCCATCAACTTACGTTTTGTTATCGAACATGTTTGCTGGTGGTAGTAACTGGGACAATGTTAGAAGTTTGAGAGAACTAATGGAAACTAGAGATGTAAAGAAAGTACCGGGATCAAGTTGGATGTAAACATGAGAAGAACTATTCATTCATTAGTTCATCTGCTTTTAAAGATTTTGCACTAAATAAGTTGTTCAGTGGATGAGATCTATTTCCCCAA 1298 41.99 MNLEGVKPDNFTFASVFTGLAALSEFRLGLQVHGQLVKCGYGSDICVGNSLCDMYIKNQKLLDGFKAFDEMPSSDVCSWTQMAAGCLQCGEPMKALEIIYEMKNVGLSLNKFTLATALNACANLASMEEGKKFHGLRIKLGTDIDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNSQTKEALQIFDEMRKGEAEPNHITFICVLYACSQGGFVDEAWKYFSSMSADYGISPSEDHYVCMVNLLGRAGCIKEAEDLILRMPFRPGSLVWQTLLGACLVHGDLETGKRAAEHALNLDRNDPSTYVLLSNMFAGGSNWDNVRSLRELMETRDVKKVPGSSWM 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40596084 40597641 + XM_039039025.1 Bhi08g01339 41672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01339 354 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Bhi08g01339 354 PANTHER OS07G0578800 PROTEIN-RELATED 1 354 IPR045215 GO:0003723|GO:0009451
Bhi08g01339 354 Pfam PPR repeat family 176 222 IPR002885 -
Bhi08g01339 354 Pfam PPR repeat 251 274 IPR002885 -
Bhi08g01339 354 Pfam PPR repeat 78 106 IPR002885 -
Bhi08g01339 354 Pfam E motif 293 354 IPR046848 -
Bhi08g01339 354 Gene3D Tetratricopeptide repeat domain 149 354 IPR011990 GO:0005515
Bhi08g01339 354 Gene3D Tetratricopeptide repeat domain 1 140 IPR011990 GO:0005515
Bhi08g01339 354 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Bhi08g01339 354 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 354 - -
Bhi08g01339 354 TIGRFAM PPR: pentatricopeptide repeat domain 78 110 IPR002885 -
Bhi08g01339 354 TIGRFAM PPR: pentatricopeptide repeat domain 213 247 IPR002885 -
Bhi08g01339 354 TIGRFAM PPR: pentatricopeptide repeat domain 178 211 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01339 - - - csv:101211489 679.093
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01336 Bhi-Chr8:40595719 Bhi08g01339 Bhi-Chr8:40596084 3.85E-13 dispersed
Bhi08g01337 Bhi-Chr8:40595719 Bhi08g01339 Bhi-Chr8:40596084 1.96E-12 dispersed
Bhi08g01339 Bhi-Chr8:40596084 Bhi04g02275 Bhi-Chr4:62193925 1.83E-20 dispersed
Bhi08g01338 Bhi-Chr8:40596084 Bhi08g01339 Bhi-Chr8:40596084 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0364 . Lsi02g00268 Csa01g00746 Chy12g01366 Cme12g01798 . . Bda11g01566 . . . . . . . . . Cma18g00096 . Car18g00085 Cpe09g01095 . Bhi08g01339 . . . Hepe07g2325 . . Cla01g01466 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012247 1 4 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29