Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01369 TAAAAAAAAAAAAAATGAAAAAACCCTACGAGGGTTCAGCTTCTTCCAGTTATTGTCGACCCCTCTCCTCCTGCTCGGTTTTTCTTGTCCGGCGGCGATTGTAGTCAACCCACGAGCAGCGGTGTCGGCCACAGACACCCGTGAGCCACCATTCTTCGCCGGATTCTTGGCTGTGCTGTCCAGCAGCAGTTCAGGGTATTCAAAGATACTATTGGCGAGTTTTGAGTTTTGAGATACAGTATAAGCTCTGGTGGAATCAGCAGTTATGTCTGCAGTGGAAGAGAAGCTAGATGAAATCGAACCTTCAGCAATGAATAATGATGATTCGGTGGAAGAAGATGAAGGAGAGGAGGACCTTTCATGGTCATCAGACTCTGAGATTGGAGATGCATTGGACTGGTTGGATGCAAAGGGAGATAGAGAAGCAGTAGATGGGGCATTTTCACTCAATGCTAGGCGTCCTAATGCTCATGGTGGGCTTTATTCTCGTCAAAATTCCTCAACTCTTCAACCTCTCTCAAATCGGAACCAAAAGTTTACCAATCACATTCGAGCTTCACCTCTTGCAGAATGGGAAGGGAGGTTTAATGTGGGAATGTCAAATTCTGTTACCACTGCTATTCGTGACAGTGTCAAGGAAATGGCTATAGGGAAGACAAAAACTACAGAGAAAGCCGATCGTGCAACTGTTGAACAGGCAATCGATCCTAGAACTCGAATGGTTTTATTCAAGATGCTCAACCGAGGTGTTTTTCATGACATTAATGGCTGCATTTCTACTGGGAAAGAAGCTAATGTCTATCATGCAACAAAATCTGATGGTCAAGAATTCGCTATCAAAATCTACAAAACTTCAGTTTTGGTGTTTAAGGATAGGGATCGCTATGTCCAAGGTGACTACCGTTTCAGACACGGATATTGCAGGCATAATCCCAGGAAAATGGTTAAGACATGGGCCGAGAAGGAAATGAGGAATTTGATGAGGTTAAAAGCTGCAGGAATTAGATGTCCGACTCCTCTCCTCTTGAGACTGCACGTGCTGGTTATGGAGTTCATTGGCAAGACAGGTTGGGCTGCACCTCGTCTTAAGGATGCTGCCTTGTCGTTGAACAGGCTACGGGAAAGTTATTTGGAGATAATTATTACAATGCGGACACTCTACCAGAAGTGCAAGTTAGTGCATGGAGATCTTAGTGAATATAACATACTTTATTTTGAGGGTCACCTTTATATTATAGATGTTTCTCAAGCCGTTGATCTTGACCACCCTCATGCCCTTGATTTCCTCCGTGAAGATTGTCTTCATGTTTCTGATTTCTTTAAAAAACATGGTGTAGCTGTAATGACAATACGAGAACTGTTTGATTTTATAGTTGATCCATGCCTCACTGATGAGATGGTTGATAATTATCTAGAAGAGATGCAAGAGAAAATCATGGCAAGAGGTGATATATCAGTGGAGGATGAAATTGCGGATTCTGTATTTGTCCAGTCATATATTCCAAAGACACTGGATAGTGTCAAACATGCTGAGGAGGATGTAATACGTTTAACAAGTGGTCGGGACACTGAAGATATGTACTATAAGACCATTACAGGCTTAAAACAGGCCCTTCCAAGAGTTCAACCTGCGCCGGAGATAAAAGATGAGGAAGAACACCATGCAGACCCAATTGAACCGTCCAAAAATATAACCAGTTTGTCAAATTCTTGCGAGAAAGAAACCGAATCGACATCAGAGGAAGATGAAGAGAGCTCAAATGAGTCAGAAGGAGAACTGGGTTCTTCAACCGAGACGACGCAGATGCCAGTTGACAGGAAAACTGCCAGAAAAGAGAACAAAAAGAAGGTGAAGGAAGAGAAGAGGGAGGCTCGCAAGAACAAGGTCCCAAAGGCTGTAAAGAAACGAAAGAAGAAGTTGGCAAAGTCCCATAAGTAAGGTGAAAACTGGTTCAATAAGGTCCGTTTTGAATGTCGATGGTTACTATTATGAACTGGATCATGTAAAGTTCTTGGTTTATTGTTTATTTATCTTCCGTTTTCATTTGATTTAACAAGGGTACAAATGAAAATGGAGATAATACGATTTTGCTGTCTGATTTATGAGAATTAGGATCTATAGCTTCAAACAGAAACGTTCATATTACTTTTTCATGTTTATTACATGAAAGCATGAAGAAAATGGTTTATAAAGAAGAGATTTGTATC 2208 41.49 MSAVEEKLDEIEPSAMNNDDSVEEDEGEEDLSWSSDSEIGDALDWLDAKGDREAVDGAFSLNARRPNAHGGLYSRQNSSTLQPLSNRNQKFTNHIRASPLAEWEGRFNVGMSNSVTTAIRDSVKEMAIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKSDGQEFAIKIYKTSVLVFKDRDRYVQGDYRFRHGYCRHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPLLLRLHVLVMEFIGKTGWAAPRLKDAALSLNRLRESYLEIIITMRTLYQKCKLVHGDLSEYNILYFEGHLYIIDVSQAVDLDHPHALDFLREDCLHVSDFFKKHGVAVMTIRELFDFIVDPCLTDEMVDNYLEEMQEKIMARGDISVEDEIADSVFVQSYIPKTLDSVKHAEEDVIRLTSGRDTEDMYYKTITGLKQALPRVQPAPEIKDEEEHHADPIEPSKNITSLSNSCEKETESTSEEDEESSNESEGELGSSTETTQMPVDRKTARKENKKKVKEEKREARKNKVPKAVKKRKKKLAKSHK 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41072398 41078141 - XM_039039159.1 Bhi08g01369 41702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01369 557 MobiDBLite consensus disorder prediction 540 557 - -
Bhi08g01369 557 CDD RIO1_euk 166 355 - -
Bhi08g01369 557 MobiDBLite consensus disorder prediction 459 557 - -
Bhi08g01369 557 Gene3D Phosphorylase Kinase; domain 1 163 265 - -
Bhi08g01369 557 ProSitePatterns RIO1/ZK632.3/MJ0444 family signature. 304 315 IPR018935 GO:0004674|GO:0005524
Bhi08g01369 557 PIRSF STPK_RIO1 2 557 IPR017407 GO:0004674
Bhi08g01369 557 MobiDBLite consensus disorder prediction 1 38 - -
Bhi08g01369 557 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 19 555 - -
Bhi08g01369 557 MobiDBLite consensus disorder prediction 16 35 - -
Bhi08g01369 557 SMART rio_2 135 371 IPR000687 GO:0004674|GO:0005524
Bhi08g01369 557 SUPERFAMILY Protein kinase-like (PK-like) 166 351 IPR011009 -
Bhi08g01369 557 MobiDBLite consensus disorder prediction 516 539 - -
Bhi08g01369 557 Pfam RIO1 family 177 364 - -
Bhi08g01369 557 MobiDBLite consensus disorder prediction 65 85 - -
Bhi08g01369 557 MobiDBLite consensus disorder prediction 71 85 - -
Bhi08g01369 557 Gene3D Transferase(Phosphotransferase) domain 1 271 412 - -
Bhi08g01369 557 Coils Coil 519 539 - -
Bhi08g01369 557 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 19 555 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01369 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] - csv:101208620 926.391
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01369 Bhi-Chr8:41072398 Bhi08g01370 Bhi-Chr8:41072398 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g881 . Blo16g00244 . . . . Bma06g00239 . Cmo13g00800 . . . . . . Cpe20g00338 . . . . . . . . . . . . . . . . Cone16ag0055 . . Lsi02g00285 Csa01g00757 Chy12g01210 Cme12g01632 . . Bda11g01629 . . . . . Sed01g1812 . . Cma13g00771 . Car13g00618 . . . Bhi08g01369 Tan05g2119 Cmetu12g0770 Lac10g0339 Hepe07g2309 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007073 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 4 1 34