Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01405 CACGTTTTTCCTAGTTTACCTCTCTCTGTTTTTCCAGCTGCTTGTTACAGCAGGCTGCAAGTTTGGTCTGCAGGAGCTTAACGTATCAGCAATGGGGAAGTCGCCAGGGAAATGGATCAAGACCATCTTGTTTGGGAAGAAGTCTTCCAAATCTAATCTTTCTAAGGGCAGAGAGAGAAATGGAAATGAGAAAGAAGTATTGGTTTCTGCAAAGGCATCAGAAACTACCACTGTTATTAGTCATCCTGTAGCTTCACATCCAACCCCAAGTACCATAGATACAAATGAAGGGGTGCCAAAAATTACCAACAATGAGGCAACTAATGTGTTGCATGAAAGATCAATATCAATGCCAGGAAATCAAGATGCAGAAATTCAAGGATCTACCTGCCAAGATGCACCATCTGATCCTGAGAGAATCCGTGAGGAGGCGGCTGCAACTAAGGCTCAAGCTGCTTTTAGGGGTTATTTGGCTCGCCGAGCATTCCGGGCTCTCAAAGGTATTATTAGGTTGCAGGCGCTTATTCGTGGTCATTTGGTAAGGAGACAGGCTGTTGCCACTCTATGTTGTATGCTTGGAATTGTTAAGTTCCAGGCTATTGCTCGGGGAAGAAGGGTGAGGCTTTCTGATGTAGGGTTTGAAGTGCAGAACAAATGTAGATTAGTACAGATACAGGATCAACTATCAGTGGATCCTGTTGGAGTAAGCCTCTCTACACGAATGGCAAAACTTTCTGCAAATGCTTTCACTATCAAGCTTGCTTCATCTACAACGTCAAAACCTATGCAACTCTATTTTGATAATGGAGATGAAAATTCAGTCTTGAAATGGTTAGAACGCTGGTCAAATTCTAGGTTTTGGAAACCAATTCCCCAAGTAAAAAAAGCCCCAGAGTCTAAATCTCAAAGAAGGCTGAGCACTGGTCAAACTGGAGAGGCACATACCGTGAGATCAAAGCGCACAAGGAGAGTTCCTACTGCAAACAACGACAGTGCTGCTGTCCAATCATCTACAGAACTTGAGAAACCCAAACGGAATTTTAGGAAAGTCTCTAGTCATTCCGCTGCCGAGCAGGTTCAGGAGAATCCCCAGATGGAGCTTGAAAAGGTCAAGCGTAGTTTAAGAAAAGTCCATAACCCCGTCCTTGAGAATCCTGCCCAAACGGAAGTTGATGCTGAGAAGGCCAAGGAAAGTTTGGAGAAGGCTTCTAATGGTCTAGGCCGTGACCTTTTGGCAAGAGGTACTAGTAATTCTTCTGAGAAGATGAAAAAAGAGGCAATCTCAACGATTCCCGTCCAGCCTGATTTGGAAACAACGCCTGAGCCGTTACCAGCGAAAGAGATAGTTAATGTACCTAATAGTGATCCAGTTGTAGATTCACAGCCTTTGATTGAGAGCAGTGACAAAGATAAAAGCATTGCTGGAGATGAGGCTGCTGTAGAGACTAAGCCTTTGACAGAGAGCTACCCTAAAGATGAAATCAATCCATTACCAAATGGGGAATCAAACCACAAGGAAGATTATACTAACAACGAGAATCTGAAATCTGGCAGGAAATCCTCTACTCCAGCCAAGCAAGAGCGAGTGGAGAATGGTTTGCAGCACAGTCCAACCTTACCTAGTTACATGGCAGCAACTGAATCTGCAAAGGCAAAACTGAGAGCACAAGGATCTCCAAGATTTGGACAGGATAGTGAAAGAAATAACCTCAACCGACGTCATTCTTTACCATCACTCACAAATGCTAAAATTAGCTCACAGTCTCCACGAACACAAAGACTCGTTCAAGCAGGTGGCAAAGGAGGAAATAAAAATGACAAGGCACTTCTGGGATCAAGAGATGGAAATGGAAAGGTAATCCAAGCAGATTGGAGAAGGTAAATTTGGGTTTTCAGATGTCAACAACTATTGAGGGGTGAATTTCATCTGAAAGCTTTTTTGATTCATACATTTGTGATCAGCCATCACCTATTCAGTGACTGGGTCCATCTTCTTCTCAAGGGGGGCTGCTGAGTCCAATATGGTCTTATCTGATTATCCTTTCATCTTGGTTGTTTGAGTGCATGTACATCATAGGTTTTAAGTTTTTTTCTTTCTTGTTTTCTGTCCTCCCCCCCCCCCCCCCCCCACCCCCCCAAAGTTTTTTGTGCTGCAATTACACATTATTTAAGGCTACTCTGTTCTATTACAGGTTGTTTATACTGTATCTGATTGTGATTATCATGTTCAATGGACACCTTAATTATGTTGGTCTCATGGCTATTATTATGTGAATTTGCAAATGTT 2287 42.98 MGKSPGKWIKTILFGKKSSKSNLSKGRERNGNEKEVLVSAKASETTTVISHPVASHPTPSTIDTNEGVPKITNNEATNVLHERSISMPGNQDAEIQGSTCQDAPSDPERIREEAAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQNKCRLVQIQDQLSVDPVGVSLSTRMAKLSANAFTIKLASSTTSKPMQLYFDNGDENSVLKWLERWSNSRFWKPIPQVKKAPESKSQRRLSTGQTGEAHTVRSKRTRRVPTANNDSAAVQSSTELEKPKRNFRKVSSHSAAEQVQENPQMELEKVKRSLRKVHNPVLENPAQTEVDAEKAKESLEKASNGLGRDLLARGTSNSSEKMKKEAISTIPVQPDLETTPEPLPAKEIVNVPNSDPVVDSQPLIESSDKDKSIAGDEAAVETKPLTESYPKDEINPLPNGESNHKEDYTNNENLKSGRKSSTPAKQERVENGLQHSPTLPSYMAATESAKAKLRAQGSPRFGQDSERNNLNRRHSLPSLTNAKISSQSPRTQRLVQAGGKGGNKNDKALLGSRDGNGKVIQADWRR 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41679309 41684475 - XM_039038664.1 Bhi08g01405 41738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01405 596 MobiDBLite consensus disorder prediction 295 310 - -
Bhi08g01405 596 Pfam Protein of unknown function (DUF4005) 481 574 IPR025064 -
Bhi08g01405 596 MobiDBLite consensus disorder prediction 43 69 - -
Bhi08g01405 596 Pfam IQ calmodulin-binding motif 136 153 IPR000048 GO:0005515
Bhi08g01405 596 Pfam IQ calmodulin-binding motif 114 133 IPR000048 GO:0005515
Bhi08g01405 596 MobiDBLite consensus disorder prediction 542 564 - -
Bhi08g01405 596 ProSiteProfiles IQ motif profile. 136 158 IPR000048 GO:0005515
Bhi08g01405 596 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Bhi08g01405 596 MobiDBLite consensus disorder prediction 379 596 - -
Bhi08g01405 596 MobiDBLite consensus disorder prediction 263 335 - -
Bhi08g01405 596 PANTHER PROTEIN IQ-DOMAIN 31 1 585 - -
Bhi08g01405 596 SMART iq_5 134 155 IPR000048 GO:0005515
Bhi08g01405 596 SMART iq_5 111 133 IPR000048 GO:0005515
Bhi08g01405 596 Gene3D - 110 159 - -
Bhi08g01405 596 MobiDBLite consensus disorder prediction 380 394 - -
Bhi08g01405 596 PANTHER IQ-DOMAIN 5-RELATED 1 585 - -
Bhi08g01405 596 MobiDBLite consensus disorder prediction 484 513 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01405 - - - csv:101214198 1061.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01405 Bhi-Chr8:41679309 Bhi12g01681 Bhi-Chr12:54343561 6.75E-20 dispersed
Bhi08g01404 Bhi-Chr8:41679309 Bhi08g01405 Bhi-Chr8:41679309 0 tandem
Bhi08g01405 Bhi-Chr8:41679309 Bhi08g01406 Bhi-Chr8:41679309 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008895 1 3 2 1 1 1 2 0 1 0 0 0 2 1 1 2 0 2 1 0 1 1 1 1 1 0 1 4 0 3 34