Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01449 TTTCAAAAATTACGAAAAACCCATCCCCCGCCTAAAGTCTAAAATCTCTACTCTCTCTCTCCCCCCCCTTAATCTCAACGGTCCTCATTCACTCTCTCTCTCATCTCTCTTTTCTCTCTCATTACCTCAATTTTCTCTTCCCTCCAATTCCCAACCCCACTTCCCGATAATTTTCTTCACTCCTTTGTAGATCTGCGGCGGCGGCGGCGGCGGTGGTGACGGCGACGACTTCATGGCGGCTCTGCCATCTTCTTCTGCTTTACCGGATTCTTCTTCCTCCAGACACCATACTTACAGTAGAAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTTCATTCGATCGGGCTTGACGATGCCGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATCGTGAATGTTTTGGAGAGCGTTGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTAAAGGAGAATTGCAGTGCATCTGATGGTAACGATTATGCGAAAGTCTCGGATGACGAAGATGAGGATGAAAGATTTTCCAATCCAACTGGAAGCCAGACCTCAACTGCAGCCGTGCCAAAATCATCTTCATCATCGTTAAAAGCTGCATCTGCAGACAATAGAAGGGAAAAGTCATTGGCGCTCCTGACGCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTTAATATGATTTCCCTTGATGAAGCTGCTAAGCTCTTATTAGGAGATGGCCACAATTCATCGATAATGAGAACTAAAGTAAGGAGGCTATATGACATTGCGAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACCCATACAACGGACACAAGAAAGCCGGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCCACCGTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGATGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAGTTCAGCCTATCAGGGTTTAAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGCGAGAATTCTTCGCAAGAGGATAGCCAGAATAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCAGTAACGGTAGCTAAAGTTGGTGTCTCAGACAATAACAATGCGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGTTATCTCCTTTCCCCTTCGGTGTTCAATGAAATAGGCGATTTTGCCTTTGTTGAAAAGTTTCTGGATGCAATTCTTGTGAAAGTAAATGAATGCAAAGAAAAATTCCAAATCAGAGAAGTTGGCTTATCGATTCTGGATGATCTTCTGGTACTTGTTCTTTATCTAAGGCTTGCTGTTTGTTTCTTCCACTTGCTTCATTCCATATAATTTCTGAAGTCCCACAGGATTCTTTTCCTTTTCATCCTGCTGAACTGTCCTGGGAAAATAAATTTTGGAGAAATCAAGAGAAAATAGATGGCAATGATTAGTGGAATGATTCTCTAACATCACTCGTATGAATTTTAGATTTGAACTTTTAATCTTTCTAAGGTTATTGACATGACCTTACTTAAACAGATCTGTTCTATAGGTTGTACGATTGTATCTTTGAGTTTTAAAGGAAGGTTATTGATGTTTTGATTAGTTAAATCATGTTTAAATCGGCTTAGATGAATCGGTTTAATTGAAGAAATGCTGAGATTGAAATGAAACAAACAATTGTTACTTCCAA 1852 41.41 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKAASADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLPESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNAKRTHDWESLSSTFRPQYHNQVISFPLRCSMK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42588827 42592711 + XM_039040118.1 Bhi08g01449 41782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01449 367 SUPERFAMILY Winged helix DNA-binding domain 160 239 IPR036390 -
Bhi08g01449 367 Gene3D - 153 240 IPR036388 -
Bhi08g01449 367 Gene3D - 18 91 IPR036388 -
Bhi08g01449 367 MobiDBLite consensus disorder prediction 106 153 - -
Bhi08g01449 367 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Bhi08g01449 367 MobiDBLite consensus disorder prediction 131 153 - -
Bhi08g01449 367 PANTHER TRANSCRIPTION FACTOR E2F 7 359 IPR015633 GO:0000978|GO:0006357
Bhi08g01449 367 Pfam E2F/DP family winged-helix DNA-binding domain 160 238 IPR003316 GO:0005667|GO:0006355
Bhi08g01449 367 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Bhi08g01449 367 SMART E2F_TDP_2 158 238 IPR003316 GO:0005667|GO:0006355
Bhi08g01449 367 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
Bhi08g01449 367 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 7 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01449 K09391 E2F7_8; transcription factor E2F7/8 - csv:101219210 661.759
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi02g00386 Bhi08g01449 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01449 Bhi-Chr8:42588827 Bhi08g01451 Bhi-Chr8:42588830 0 dispersed
Bhi08g01449 Bhi-Chr8:42588827 Bhi08g01450 Bhi-Chr8:42588828 0 tandem
Bhi04g00158 Bhi-Chr4:3863848 Bhi08g01449 Bhi-Chr8:42588827 3.90E-08 transposed
Bhi02g00385 Bhi-Chr2:7466016 Bhi08g01449 Bhi-Chr8:42588827 2.24E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g400 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed08g2543 . . . . . . . . Bhi08g01449 Tan05g2045 . . . . . . . . . . . . . . . .
Vvi17g681 Blo04g00746 Blo16g00207 . . . Bpe13g00264 Bma06g00196 . Cmo13g00935 Cmo18g00114 Cma10g00152 . Car10g00143 . Sed08g0171 Cpe20g00223 . Bhi02g00386 Tan09g2196 Cmetu02g0961 . Hepe09g0165 . . Cla06g01632 Cam06g1815 Cec06g1865 Cco06g1871 Clacu06g1773 Cmu06g1715 Cre06g2535 . Cone16ag0131 . . Lsi02g00346 Csa01g00818 Chy12g01298 Cme12g01723 . . . Bda14g00825 . . Bma03g00799 . Sed08g2543 Cmo10g00164 . Cma13g00908 Cma18g00144 Car13g00748 Car18g00138 Cpe09g01047 Cpe18g00824 Bhi08g01449 Tan05g2045 . . . . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01514 Csa01g00185 Chy02g02548 Cme02g01934
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1718 PF02319 E2F_TDP 2.10E-20 CL0123 Bhi TF