Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01452 AACCCATCCCCCGCCTAAAGTCTAAAATCTCTACTCTCTCTCTCCCCCCCCTTAATCTCAACGGTCCTCATTCACTCTCTCTCTCATCTCTCTTTTCTCTCTCATTACCTCAATTTTCTCTTCCCTCCAATTCCCAACCCCACTTCCCGATAATTTTCTTCACTCCTTTGTAGATCTGCGGCGGCGGCGGCGGCGGTGGTGACGGCGACGACTTCATGGCGGCTCTGCCATCTTCTTCTGCTTTACCGGATTCTTCTTCCTCCAGACACCATACTTACAGTAGAAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTTCATTCGATCGGGCTTGACGATGCCGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATCGTGAATGTTTTGGAGAGCGTTGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTAAAGGAGAATTGCAGTGCATCTGATGGTAACGATTATGCGAAAGTCTCGGATGACGAAGATGAGGATGAAAGATTTTCCAATCCAACTGGAAGCCAGACCTCAACTGCAGCCGTGCCAAAATCATCTTCATCATCGTTAAAAGCTGACAATAGAAGGGAAAAGTCATTGGCGCTCCTGACGCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTTAATATGATTTCCCTTGATGAAGCTGCTAAGCTCTTATTAGGAGATGGCCACAATTCATCGATAATGAGAACTAAAGTAAGGAGGCTATATGACATTGCGAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACCCATACAACGGACACAAGAAAGCCGGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCCACCGTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGATGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAGTTCAGCCTATCAGGGTTTAAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGCGAGAATTCTTCGCAAGAGGATAGCCAGAATAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCAGTAACGGTAGCTAAAGTTGGTGTCTCAGACAATAACAATGCGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGATGTGCTTTGTTACGTGCTCGAAATATTTAATAAGCTTATCTCAATTAAGCGTTGTTTCTACTGCAATTAGTCAAAGGAAAAAAAAAAAAAAGCTTGGCCTTTTCTTGGTTGCATTTCCTTAATGCACCAACTTAGTACGGGGTCATCTTTGAAAGTGCAAAACATTTTCAATAGGTTCTTGTTTGTATTATCCCGAAAACAAGCCTAACATAGTTGTTAGTTATTTTTTTTTTTCTCTTCTCTTCA 1607 42.75 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLPESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNAKRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42588844 42592042 + XM_039040117.1 Bhi08g01452 41785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01452 381 PANTHER TRANSCRIPTION FACTOR E2F 7 373 IPR015633 GO:0000978|GO:0006357
Bhi08g01452 381 Gene3D - 150 237 IPR036388 -
Bhi08g01452 381 Gene3D - 18 91 IPR036388 -
Bhi08g01452 381 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
Bhi08g01452 381 SMART E2F_TDP_2 155 235 IPR003316 GO:0005667|GO:0006355
Bhi08g01452 381 MobiDBLite consensus disorder prediction 131 149 - -
Bhi08g01452 381 MobiDBLite consensus disorder prediction 106 153 - -
Bhi08g01452 381 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 7 373 - -
Bhi08g01452 381 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Bhi08g01452 381 Pfam E2F/DP family winged-helix DNA-binding domain 157 235 IPR003316 GO:0005667|GO:0006355
Bhi08g01452 381 SUPERFAMILY Winged helix DNA-binding domain 157 236 IPR036390 -
Bhi08g01452 381 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01452 K09391 E2F7_8; transcription factor E2F7/8 - csv:101219210 712.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00387 Bhi-Chr2:7466026 Bhi08g01452 Bhi-Chr8:42588844 1.95E-124 dispersed
Bhi02g00388 Bhi-Chr2:7466028 Bhi08g01452 Bhi-Chr8:42588844 3.81E-131 dispersed
Bhi08g01450 Bhi-Chr8:42588828 Bhi08g01452 Bhi-Chr8:42588844 0 dispersed
Bhi08g01451 Bhi-Chr8:42588830 Bhi08g01452 Bhi-Chr8:42588844 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1721 PF02319 E2F_TDP 2.30E-20 CL0123 Bhi TF