Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01468 TGTTAATTGACTGCATGGAGTTCACTATCTCCAAGAAGATTTTCTCTCGTCGATCCCTAAAATTAAGAAGCCAAATTTGGAAGGTGAACCGAAAGTTTAAAGTTATGTTCAACTGATTTTGTCTCTTTCAATTGACAAATCGTCATTCAATTCAATGCACAACCATAAGCAATCAATCCTTCGCATGCAGACCTCCATAGCCTCCATTAATGGGAGGGTTTTTGCTTCCCTCTCTTTGAACGTCAGAAAATGGGTTATGACGGCGAAAAAATGGTGTTGGCTATGTGTAGCGACAGGAACATGGGATCGGGGATTACTATTTGGGATGTCAAAACAGGCCAAACTCTCCTTCACATTCCCACTTGCGCTTCGCCTCCCTACGGTTTGATTTGCTTGAGAAACGAGTTCCTTGTTGCTTCTCAGACTCGCAAGGAAGGGTCTGTTGGTGGTGGATCTATCTTCATTTGGTCACTCAACAAGCCTCAGCCGCCCATTATGAGCTATACATTAGAGCCCATTGGACCACTTGCCTCAACAAAGGACAGTGTATATCTTGCAGGCGGAACTCACTCAGGAAATATTCATCTTTGGGAGGTTGGTAGTGGTAAATTGCTCAAGATTTGGAGTGGTCAACGTAAACCTATAAAATGCGTTCTATTTTCTTGGGACGATTCGTTTCTCATTACTGGTTCAGCTGACGGAATGATTTGTGTCTGGTCCATGATTGGTTTGCTGGATGTGGAACTTGTGGGAAATTCACAACCAATATTGTATTGTCTCATGGAACATAACTCATCTTTAACTGGTCTACTCACCATGTCTGGCTGCTCGATGTCAATAATCATTTCAAGCTCCCTCAATGGCAGTTTAAAGTTTTGGGATTTAATGTCTGGAATGATTAGGGGAACTCAAGCTCATACAGAGGGGATCACTGCAATTGTTCTTCATCCAACTGAGCAACTTCTGTTCTCTGGGACCGCTGACGGGCGAATTTTTGCTAGCAGGCTTGCATTTGGATTGGATAACTGCATTACCATTAAAGAAAACCAATTACTTGCACCAAAAGGACACAAAGGAGCTATTACTGCTCTGGCCTTCAGTCAGATGGATCTAATTTCTGCATCCGAGGATTGTACTATCTGCAAATGGGACATCAGCGGTCAGAGAATCATACAGAAGCTCGACCATAAGAAAGGGAGAATAACCAATTTATTAGCAGTTCCACGGTCGTCCTTGATCTCCACATCAAATCGTAAGAGAGTCTTGAATCAATTCTCCATGTCCTCACTCGACAAGTATCCTCAGCCGGCTAACTTGTTGAAGAGCACAATACCTCTCTTTCCCTCCCTCCAACCCCTCCGGGAGAATCTGAATTCCATCGGATTCACAAGTACTGGCTCATTGAATCAGCAAATACTTGATACGAAGAAGGGACATCGGCAGCAATACAGATGAAAGTAGAAACAAGCTTAGAAAGGCGAGTATGGGCTTCCAAAATGACGAAGCAAGTGATGGACATGAACAACCATCTTCAATCACGGTTACTAGACATGATGCGGATTCGATTGTTCGGGCCTACAAAAATTAGCTCG 1592 43.34 MGYDGEKMVLAMCSDRNMGSGITIWDVKTGQTLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPIMSYTLEPIGPLASTKDSVYLAGGTHSGNIHLWEVGSGKLLKIWSGQRKPIKCVLFSWDDSFLITGSADGMICVWSMIGLLDVELVGNSQPILYCLMEHNSSLTGLLTMSGCSMSIIISSSLNGSLKFWDLMSGMIRGTQAHTEGITAIVLHPTEQLLFSGTADGRIFASRLAFGLDNCITIKENQLLAPKGHKGAITALAFSQMDLISASEDCTICKWDISGQRIIQKLDHKKGRITNLLAVPRSSLISTSNRKRVLNQFSMSSLDKYPQPANLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKKGHRQQYR 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42989859 42992918 - XM_039038159.1 Bhi08g01468 41801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01468 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 310 IPR001680 GO:0005515
Bhi08g01468 401 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 7 396 - -
Bhi08g01468 401 Pfam WD domain, G-beta repeat 119 157 IPR001680 GO:0005515
Bhi08g01468 401 Pfam WD domain, G-beta repeat 268 301 IPR001680 GO:0005515
Bhi08g01468 401 ProSitePatterns Trp-Asp (WD) repeats signature. 198 212 IPR019775 -
Bhi08g01468 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 125 158 IPR001680 GO:0005515
Bhi08g01468 401 Gene3D - 3 165 IPR015943 GO:0005515
Bhi08g01468 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 125 158 - -
Bhi08g01468 401 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 4 318 IPR011047 -
Bhi08g01468 401 Gene3D - 168 398 IPR015943 GO:0005515
Bhi08g01468 401 SMART WD40_4 214 252 IPR001680 GO:0005515
Bhi08g01468 401 SMART WD40_4 80 115 IPR001680 GO:0005515
Bhi08g01468 401 SMART WD40_4 118 157 IPR001680 GO:0005515
Bhi08g01468 401 SMART WD40_4 264 301 IPR001680 GO:0005515
Bhi08g01468 401 SMART WD40_4 170 211 IPR001680 GO:0005515
Bhi08g01468 401 PANTHER WD-REPEAT PROTEIN 18 7 396 IPR045227 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01468 K14829 IPI3; pre-rRNA-processing protein IPI3 - csv:101212515 687.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01466 Bhi-Chr8:42989439 Bhi08g01468 Bhi-Chr8:42989859 0 dispersed
Bhi08g01468 Bhi-Chr8:42989859 Bhi09g03308 Bhi-Chr9:84654910 5.22E-57 dispersed
Bhi08g01467 Bhi-Chr8:42989439 Bhi08g01468 Bhi-Chr8:42989859 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g137 . . . . . . . . . Cmo18g00209 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma18g00325 . Car18g00223 . . Bhi08g01468 . . . Hepe07g2098 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014470 0 3 0 0 0 1 1 0 0 1 1 0 1 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 21