Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01589 TTTCATGCATTAGAAACTTTCCATTTCTTCCTTCCCTCAATCCAAAATATTGTTGTTCTCCCAAAGCTTTCAACTACTATATAAATTGCCCCCATTCCCTCAAAATAAAACTCACTCAATACTCTTTAATCTATCACAATATATATCCACTAAATCCTTCCAAAATGACCTTTCAAAATGGTGTCTCTTCCTCCACGAAAGCTCAACTCCATGTCCCTACCATCGGAACCGACCATAATGAGCTTGTGAAAATCATTTCCTTTTCTCCTATTCAAAATGGTACTCATAATGGCACTCAAAATGGAGCTCAAAACGAGACCTCTTTTTCACCCGTTTTTCCTGGCTGCTATGTCGATATTGCCCCATGCTATCCTGAGGAGGCACATGTCTATAAGCTAGAGAAGGTCATATTCAAGGGGAAATCCCAATATCAAGATCTTTTTGTTTTTCAGTCACCAACACATGGGAAGGTTGTAATCTTGGATGGCTCCCTTCAGCTAACAGAGAAGGATGAGTTTGCTTATCAAGAAATGCTCACTCATCTCCCACTTTGTTCTATTCCCAATCCCAAAAAGGTTTTGCTGATTGGGGGTGGGGATGGAGGGATTCTTCGAGAAATATCTCGACATGCTTGTGTGGAGCACATCGACATTTGTGATCTCGACAAAATGGTGATCGATGTTTACAAAAGGTATTTCCCAGACATTGCTATCGGGTACAAGGATCCTCGTGTGAATGTATGCATAGGCGACGGTGTGGCCTTCATCAAATCTGTTCCTCCAGCCACCTATGATGCTATTATAATTGATGCATTTCAGGGCATGGGGGCTTATGCAACAGAGCTTTCAAATGAAGACTTACTTAAATCAATGGCAACGGCTTTGAAGCCCGGTGGCGTAATGTCGACTCCGGCTGACAGCATATGGCAAAACAATTTCGCCATGGAAGATACCATAACTCTTTGCCGTGACATCTTCAAAGGCTCTGTAAACTATGCTTGGACCTCTGTTCCTTCATATCCAAGTGGAGTGATCGGCTTCATGCTCTGTTCAACCGCCGGTCCATCAGTCGACTTCAAACACCCGGTGAACCTGTTGGATCCAGGAAATTTTGGTGTTGCAAAAGGACCCCCTAAGTTCTACAACCCAGAGATCCATACTGCTGCGTTTTGTCTTCCTGCATTCGCAAAGTCGGCGATGGGTTCCAAATACACATGAG 1218 43.35 MTFQNGVSSSTKAQLHVPTIGTDHNELVKIISFSPIQNGTHNGTQNGAQNETSFSPVFPGCYVDIAPCYPEEAHVYKLEKVIFKGKSQYQDLFVFQSPTHGKVVILDGSLQLTEKDEFAYQEMLTHLPLCSIPNPKKVLLIGGGDGGILREISRHACVEHIDICDLDKMVIDVYKRYFPDIAIGYKDPRVNVCIGDGVAFIKSVPPATYDAIIIDAFQGMGAYATELSNEDLLKSMATALKPGGVMSTPADSIWQNNFAMEDTITLCRDIFKGSVNYAWTSVPSYPSGVIGFMLCSTAGPSVDFKHPVNLLDPGNFGVAKGPPKFYNPEIHTAAFCLPAFAKSAMGSKYT 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45581984 45585706 - XM_039037734.1 Bhi08g01589 41922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01589 350 Hamap Polyamine aminopropyltransferase [speE]. 63 346 IPR001045 GO:0003824
Bhi08g01589 350 PANTHER SPERMIDINE/SPERMINE SYNTHASE 34 344 IPR001045 GO:0003824
Bhi08g01589 350 Gene3D Vaccinia Virus protein VP39 114 349 IPR029063 -
Bhi08g01589 350 CDD AdoMet_MTases 147 246 - -
Bhi08g01589 350 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 59 297 IPR030374 -
Bhi08g01589 350 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 138 151 IPR030373 -
Bhi08g01589 350 Pfam Spermine/spermidine synthase domain 117 305 - -
Bhi08g01589 350 Gene3D Spermidine synthase, tetramerisation domain 42 113 IPR037163 -
Bhi08g01589 350 PANTHER SYNTHASE 1, PUTATIVE-RELATED 34 344 - -
Bhi08g01589 350 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 59 344 IPR029063 -
Bhi08g01589 350 Pfam Spermidine synthase tetramerisation domain 70 114 IPR035246 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01589 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - vvi:100243226 430.639
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi02g00426 Bhi08g01589 CCT
Bhi02g00426 Bhi08g01589 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01681 Bhi-Chr7:46866680 Bhi08g01589 Bhi-Chr8:45581984 5.83E-131 dispersed
Bhi08g01589 Bhi-Chr8:45581984 Bhi12g00627 Bhi-Chr12:19125998 3.87E-107 dispersed
Bhi02g00426 Bhi-Chr2:7926285 Bhi08g01589 Bhi-Chr8:45581984 4.82E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g719 . . Bda06g00587 . Bpe12g00587 . . . Cmo13g00925 . Cma10g00133 . Car10g00126 . . Cpe20g00230 . Bhi02g00426 . . . . . . Cla06g01652 Cam06g1836 Cec06g1887 Cco06g1892 Clacu06g1796 Cmu06g1738 Cre06g2556 Cone2ag0896 . . . Lsi02g00359 Csa01g00837 Chy12g01282 Cme12g01707 Blo13g00052 Blo15g00274 . . Bpe07g00828 . . Bma08g00171 Sed08g2494 Cmo10g00140 . Cma13g00898 . Car13g00738 . . Cpe18g00837 Bhi08g01589 Tan05g2027 Cmetu12g1070 Lac10g0432 Hepe07g2240 . . Cla01g01286 Cam01g1442 Cec01g1480 Cco01g1447 Clacu01g1353 Cmu01g1257 Cre01g1279 Lsi06g01542 Csa01g00162 Chy02g02568 Cme02g01957
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106