Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01597 TGATAGCTAAGTTTGCATGCATTTTATTTCTTTATTTCATCTTCCTTTTCATTACTAATCATTGCTAAATGCCTAATTTAACATTTTATCAACTTTCTTCAATCTCTACTTTATGGTGGTGACTGAGATTGATGATGCACTCATATGGAGCATTATTCAATTTGATCCTCATAATTTATTAGTTTCTAACAACAAACCAAATCATACAAAGTGATATGGATTTCAGTGTGCCCTGTGATTTCCTTTTCTGGGAAATGTAATGAGGTTTTATAAGAGAAGAAAAAAGGAACCACAGTGTTTTGAATTATGGGGCATGTTAAAAAAGTGAAGAGGAGATGGAAAAAAAGGGAAAAAAGAAAACATTTTGGAGGGGCTTCTTTGTTGGGCTTGGAGTAAAGTCACTATCTTTAGTTTTTGCAATAATCTCATTGATGAAAGCAACTTGCTTCTGTTGAATTTCTCTGTGACCCCACGCCCAATTGTTGTAAATAAATTTCATCTGAGTTTTTATTCAAATTTTTCGGAATTGTTGATTCTCTCTTAAACAGCTTGTAATTTGTCCATTTTTCATCATTAAATTTTGGTTCAACAGGGTTTAACTTAAAATTTAAAAGTTGTTTGATTTAAAATTTACTTTCCTTTTTACAAGAAAATGGAAAAAATAATAGGAAAAGAAAAAAGAAAAGTTGGATACATACTTTAATAAGGGTAGATATTTGAATTTGCAGACTTGTGGTTACAATTATGCTCTGAAATGGCAGTCATTACGCTTTACAGTTGTATAAGCAACGCTGCAGAGAAATCAGATAACTGCTCAACCCCATGGCAGAACGGGATCCATTCCCTTCTACCCTTTTTCACTCACCATAATCTTTTCTTTTCCCATCTCTCTGTTCATCGATGATTCAACCCCAGAAAGAATTTCTAGCTAAAAATTCAAGTTCTTCTTTGATTTCCCTTTCCCTCGTGGTTCTTCAATCGTTTTCCTTTCCTCACATGGTGACCCTTTAGCCATTTTTGGCAGCTCCGATTGTTTTTGGGGTTTCTTGTTTTAGTTTTTGGATATGGCTATTCGAGGAGTCGATTTCAAATGGTACGATGGGTTCTTCTTGTCTATGCTTGCTACTAGTATAATAATTGTGACCATCAATTGGAGAAGGTACAATACTTGTACGTATCCTTTGCACATATGGATTGTGGTTGATTATACCTCTGTGTTTGCATTTCGCCTTTTGCTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTAGATTTTGGATGGCAGCAGCGATATGCTCGGTTTTGTGGAAGAGTTGTGGTTCTTTCTGTCCTCTCTCTATTGCTCTACCCCTTTCTATGTGCCTGGACTGTAATTGGTACCCTGTGGTTTAGAGATGCTAAAGATTGTTTGCCTGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGTGGTTAGCGCGTAGACAAGCACACTTGTTTCGTGCCCAACAAGGCATGCCAGTATCAGAATATGGGGTACTGATCGACATGATTAGAGTTCCTGATTGGGCATATGAAGCTGCAGGACTGGAAATACGAGGCATTGGCCAAGATGCTACTGGTTACCATCCCGGGCTGTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTTAGGCTGAAGGCTGTCCCAACCGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGTATGCCGTGTGCACACAATTTCCATGTTGAATGTATCGACGAGTGGCTTCGTTTAAATGTTAAATGTCCTCGATGCCGCTCCTCGGTCTTCCCAAATCTCGATCTCAGCGCTCTTTCTAACCTGCATTCGGACACAGAACAAACATCTGACAATGCTTTTGTTACAACCCAACCTTCAAGTCTATTGAGATCAACCCCAACCCGGGCAGCACATACCGAAAATACAGCAGGCCTCTATACTGACACTGCCTTAGATGCTTTGGAGAATGGAAACTCATCCCTGCCATCTGCTTCTCCACATTGATCTACAGCCACCCCTTTGAACCATCTTAACCAAAACTCCTGAGAAAGATTCAACACTGATATAAACCAAAAAAAAAAAACAGAGAGATCACTGACATCTATAGTTCTATTCTAAATACTCCGAAAACTTGCCCAAAAAGTAAAGTTTTTGTTAGGTTTGAAGAGATGGTTATAAAATATTTATGAATCTGACAGTGACCTTCAAAGTTTTACCCATGGAGGAAAAAAGAGTTCACGTGGGTTTTCTCTATTAGGCCATGTTCATGGCTTGTGGATCCTTACAGATTCCTCACTACTTGACAAATATTTCCCATCAGATCATCCTCCCTTTCCATTTCCAACCCATCCTTTTGTCTTCTTTTCTTGTTTCTTCTCTTTTTTTTTTTTCATATATATTTTTTTCTTTTAATGTGAAAGATGTGTAAGTTTGTGACATTAATCATAGTAAGATTACAAACTAATTAAAACTCCCCTTGGCATAAGTCTATCTTTGCCACGATCGGTATCAAATCGGTTGTGAGAAGATCGGAATGGAACCTGGGATTTATCTT 2667 38.55 MAIRGVDFKWYDGFFLSMLATSIIIVTINWRRYNTCTYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSVLSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLFRAQQGMPVSEYGVLIDMIRVPDWAYEAAGLEIRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSDNAFVTTQPSSLLRSTPTRAAHTENTAGLYTDTALDALENGNSSLPSASPH 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45922829 45927367 + XM_039039495.1 Bhi08g01597 41930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01597 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 327 IPR044793 GO:0004842|GO:0010182
Bhi08g01597 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Bhi08g01597 350 SMART ring_2 235 275 IPR001841 -
Bhi08g01597 350 MobiDBLite consensus disorder prediction 297 318 - -
Bhi08g01597 350 Pfam Ring finger domain 234 276 IPR001841 -
Bhi08g01597 350 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Bhi08g01597 350 SUPERFAMILY RING/U-box 217 284 - -
Bhi08g01597 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01597 Bhi-Chr8:45922829 Bhi08g01599 Bhi-Chr8:45923233 0 dispersed
Bhi08g01597 Bhi-Chr8:45922829 Bhi08g01598 Bhi-Chr8:45922834 0 tandem
Bhi02g00435 Bhi-Chr2:8209428 Bhi08g01597 Bhi-Chr8:45922829 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01597 K16284 - csv:101222360 690.263