Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bhi08g01600 | TTTAGTTTTTGCAATAATCTCATTGATGAAAGCAACTTGCTTCTGTTGAATTTCTCTGTGACCCCACGCCCAATTGTTGTAAATAAATTTCATCTGAGTTTTTATTCAAATTTTTCGGAATTGTTGATTCTCTCTTAAACAGCTTGTAATTTGTCCATTTTTCATCATTAAATTTTGGTTCAACAGGGTTTAACTTAAAATTTAAAAGTTGTTTGATTTAAAATTTACTTTCCTTTTTACAAGAAAATGGAAAAAATAATAGGAAAAGAAAAAAGAAAAGTTGGATACATACTTTAATAAGGGTAGATATTTGAATTTGCAGACTTGTGGTTACAATTATGCTCTGAAATGGCAGTCATTACGCTTTACAGTTGTATAAGCAACGCTGCAGAGAAATCAGATAACTGCTCAACCCCATGGCAGAACGGGATCCATTCCCTTCTACCCTTTTTCACTCACCATAATCTTTTCTTTTCCCATCTCTCTGTTCATCGATGATTCAACCCCAGAAAGAATTTCTAGCTAAAAATTCAAGTTCTTCTTTGATTTCCCTTTCCCTCGTGGTTCTTCAATCGTTTTCCTTTCCTCACATGGTGACCCTTTAGCCATTTTTGGCAGCTCCGATTGTTTTTGGGGTTTCTTGTTTTAGTTTTTGGATATGGCTATTCGAGGAGTCGATTTCAAATGGTACGATGGGTTCTTCTTGTCTATGCTTGCTACTAAATAATTGTGACCATCAATTGGAGAAGGTACAATACTTGTACGTATCCTTTGCACATATGGATTGTGGTTGATTATACCTCTGTGTTTGCATTTCGCCTTTTGCTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTAGATTTTGGATGGCAGCAGCGATATGCTCGGTTTTGTGGAAGAGTTGTGGTTCTTTCTGTCCTCTCTCTATTGCTCTACCCCTTTCTATGTGCCTGGACTGTAATTGGTACCCTGTGGTTTAGAGATGCTAAAGATTGTTTGCCTGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGTGGTTAGCGCGTAGACAAGCACACTTGTTTCGTGCCCAACAAGGCATGCCAGTATCAGAATATGGGGTACTGATCGACATGATTAGAGTTCCTGATTGGGCATATGAAGCTGCAGGACTGGAAATACGAGGCATTGGCCAAGATGCTACTGGTTACCATCCCGGGCTGTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTTAGGCTGAAGGCTGTCCCAACCGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGTATGCCGTGTGCACACAATTTCCATGTTGAATGTATCGACGAGTGGCTTCGTTTAAATGTTAAATGTCCTCGATGCCGCTCCTCGGTCTTCCCAAATCTCGATCTCAGCGCTCTTTCTAACCTGCATTCGGACACAGAACAAACATCTGACAATGCTTTTGTTACAACCCAACCTTCAAGTCTATTGAGATCAACCCCAACCCGGGCAGCACATACCGAAAATACAGCAGGCCTCTATACTGACACTGCCTTAGATGCTTTGGAGAATGGAAACTCATCCCTGCCATCTGCTTCTCCACATTGATCTACAGCCACCCCTTTGAACCATCTTAACCAAAACTCCTGAGAAAGATTCAACACTGATATAAACCAAAAAAAAAAAACAGAGAGATCACTGACATCTATAGTTCTATTCTAAATACTCCGAAAACTTGCCCAAAAAGTAAAGTTTTTGTTAGGTTTGAAGAGATGGTTATAAAATATTTATGAATCTGACAGTGACCTTCAAAGTTTTACCCATGGAGGAAAAAAGAGTTCACGTGGGTTTTCTCTATTAGGCCATGTTCATGGCTTGTGGATCCTTACAGATTCCTCACTACTTGACAAATATTTCCCATCAGATCATCCTCCCTTTCCATTTCCAACCCATCCTTTTGTCTTCTTTTCTTGTTTCTTCTCTTTTTTTTTTTTCATATATATTTTTTTCTTTTAATGTGAAAGATGTGTAAGTTTGTGACATTAATCATAGTAAGATTACAAACTAATTAAAACTCCCCTTGGCATAAGTCTATCTTTGCCACGATCGGTATCAAATCGGTTGTGAGAAGATCGGAATGGAACCTGGGATTTATCTT | 2257 | 39.61 | MGLDFGWQQRYARFCGRVVVLSVLSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLFRAQQGMPVSEYGVLIDMIRVPDWAYEAAGLEIRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSDNAFVTTQPSSLLRSTPTRAAHTENTAGLYTDTALDALENGNSSLPSASPH | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 45923235 | 45927367 | + | XM_039039498.1 | Bhi08g01600 | 41933 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bhi08g01600 | 283 | Pfam | Ring finger domain | 167 | 209 | IPR001841 | - | |
| Bhi08g01600 | 283 | SMART | ring_2 | 168 | 208 | IPR001841 | - | |
| Bhi08g01600 | 283 | ProSiteProfiles | Zinc finger RING-type profile. | 168 | 209 | IPR001841 | - | |
| Bhi08g01600 | 283 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 260 | - | - | |
| Bhi08g01600 | 283 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 260 | IPR044793 | GO:0004842|GO:0010182 | |
| Bhi08g01600 | 283 | SUPERFAMILY | RING/U-box | 149 | 217 | - | - | |
| Bhi08g01600 | 283 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 214 | IPR013083 | - | |
| Bhi08g01600 | 283 | MobiDBLite | consensus disorder prediction | 230 | 251 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bhi08g01598 | Bhi-Chr8:45922834 | Bhi08g01600 | Bhi-Chr8:45923235 | 0 | dispersed | |
| Bhi08g01600 | Bhi-Chr8:45923235 | Bhi10g00489 | Bhi-Chr10:11003784 | 5.49E-13 | dispersed | |
| Bhi08g01599 | Bhi-Chr8:45923233 | Bhi08g01600 | Bhi-Chr8:45923235 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bhi08g01600 | K16284 | - | csv:101222360 | 552.747 |