Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01605 TCCCTCTCTTCCATCTCTTCAAATATACCCTTTTCTCCTTCCTTCTTATTCACTTCCCATTCTCTCTAAATCCCTTCTCTCTCTCTCTCCTTATCTCTTTGCCATTTTATAAGTAGAGCAACTCAAATACACCATTAATGGAGTAACTGTGAAGTGAAAACTTCTTTTCTTTTCTCTTTCTCTCTTTGCTTCCTTCTTCCTCATTTCATCATTATGGGTCTTACTTCTCTTCAAGTCTGCATGGACTCTTCTGATTGGCTACAGGGTACGATTAACGAAGAGTCTGGGATGGATTCTTCTTCATTATCAGGAGATATGCTTTCATGTTCAAGGCCATTAACAGAGAGAAGATTAAGGCCACAACATGATCAAGCTCTGAAATGTCCAAGATGTGATTCAACTCACACCAAATTTTGCTATTACAACAATTATAGCCTTTCTCAGCCTCGTTACTTTTGCAAAACTTGTAGAAGGTATTGGACTAAAGGAGGAACTCTTAGAAACATTCCTGTTGGTGGTGGCTGTAGAAAGAACAAAAAGGTCTCCACTACTAAAAAATCCAATGATCAACAACAACAACAACCACAAATTCAACAACCCATTTCTCAAAATCATCATCTTCTTCATGGCCCTTCTTCTTCTTCTTCTTCTTCACTTCACATTCATAATCCCACTGATCTTCATCTCTCATTTCCAGATCAAGTTCAGTTCCCTCATTTCAATCCTCTCATTGGAAACTCTCCAAATTTCACCATTGGAATGCTTGAAACTCATCATCATCATCATCATCAAACTAGACCCATTGATTTCATGGACACTAAAATGGAAGCCATTGTTGGGAATAATGGTCATTACTCTACAAACCCAGATCATTTAGCTATGATTGGAGGGCTTAATGGAGATCATCATCATATCACAGCTGCTGCAACAAATTTCCATGGAATTTGCTCTCCTTATGGACTGTCACTTGATGGGAATATCAATCAAATGATGATTCCTTATGATCAACATCAAACAAATGAAGATCCAAATGGAATGGATGTGAAACCAAATACAAAGCTTTTGGCTTTGGAATGGCAAGATCAAGGATGTTCAGATAAAGTTGAATCTTATGGATATATTAATGGAATTGGGTCTTCTTGGAATGGGATGATGAATGGATATGGACCATCAACAACCAACCCATTGGTGTAAAATTGAAGGGGAAAATAGCACTCAAAATCATCAAATGGTATCAAACAACTTGAGATTGATAGGGGTCTATCATAATTAGTGCCTTTTTTTTTCTTTTTATCAGTTTCTTAAAAAGAAAAAAAAAATGTCTGATTTTTGTTTAATTTAAATCTCTCTAATTTGGAGTGTGGTTTTGGGATTGTGTCTACAAATCCAAGGCTCTCTATTAGGATTTTGTTGTATTCTAGGGAGTGCTTTTGTAGTATAAAAAAAAAAGACTTGTTTTTTCTTTTCTTTTCTCTCTCTCAAGTGGTTGTTAATTAATTAGTAAGTTATGTTTGATTATTGATGTATGATAA 1532 35.64 MGLTSLQVCMDSSDWLQGTINEESGMDSSSLSGDMLSCSRPLTERRLRPQHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTTKKSNDQQQQQPQIQQPISQNHHLLHGPSSSSSSSLHIHNPTDLHLSFPDQVQFPHFNPLIGNSPNFTIGMLETHHHHHHQTRPIDFMDTKMEAIVGNNGHYSTNPDHLAMIGGLNGDHHHITAAATNFHGICSPYGLSLDGNINQMMIPYDQHQTNEDPNGMDVKPNTKLLALEWQDQGCSDKVESYGYINGIGSSWNGMMNGYGPSTTNPLV 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46086408 46088480 + XM_039037972.1 Bhi08g01605 41938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01605 326 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Bhi08g01605 326 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Bhi08g01605 326 MobiDBLite consensus disorder prediction 100 128 - -
Bhi08g01605 326 MobiDBLite consensus disorder prediction 114 128 - -
Bhi08g01605 326 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
Bhi08g01605 326 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 15 318 - -
Bhi08g01605 326 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 318 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01605 - - - csv:101223232 565.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00056 Bhi-Chr2:1130090 Bhi08g01605 Bhi-Chr8:46086408 6.51E-35 dispersed
Bhi03g00466 Bhi-Chr3:8931199 Bhi08g01605 Bhi-Chr8:46086408 8.12E-32 dispersed
Bhi08g00258 Bhi-Chr8:10455924 Bhi08g01605 Bhi-Chr8:46086408 4.96E-39 dispersed
Bhi08g01605 Bhi-Chr8:46086408 Bhi12g00102 Bhi-Chr12:3311893 1.33E-36 dispersed
Bhi08g01605 Bhi-Chr8:46086408 Bhi10g00593 Bhi-Chr10:13006453 3.39E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g742 . . . . . . Bma06g00234 . . . . . . . . Cpe20g00240 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma18g00167 . . . . Bhi08g01605 Tan05g3313 Cmetu12g0829 Lac10g0894 Hepe07g1903 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008227 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 3 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1731 PF02701 zf-Dof 1.70E-33 No_clan Bhi TF