Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01660 ACGTGTCCTATTAAGTCAAAGAAAAATGGATCAAACTTCGAAAAGTTTGGAGAGCAATGATTCCGGCTAGATAGGCTTCTTCGAATTCTTCAATTTTGATATTTTAGAAAATATCCAACTGCACAGCAGGTTTTAATAACAGAACTAAATCTTTTCATTTTTAAAAAATTATTATTATATAATCTCTACCCAATTCAATCGCATAGTCGGTTTTCAGTATTATATATATTTGTTTCTTTGTATCTTCTCCTCTCCTCTCCGACGCTCATTCTATTGGGTTTTTTCCGAAGCCATGGAGTCTACTATGGTGACTAAGGTTAGGTATGGAGAAATGCTAAGGCGCTTTAGTGTTAGAGTCCATGAAAACGGTAGACTGGATCTGGACATCAATGGGTTGAGAGAAAAAATACGCAATCTCTTCAGCTTCTCTTCTGATGATGATTTTACAATGACTTACATTGATGAAGATGGTGATGTTGTGACCCTGGTCAATGATGATGATCTGCATGAACTGATGAGGCAACAGTTGAAGTTCTTGAAAATTGATGTGCATCTGAGAAATAAGGAAAACGACCAATCTGGTGATAGATCAGATGGAAGTTCTACCCCTATGACATCAGATCGTTCATATCAAAATGTTTGTTCTGGTATCTCTGACGTTTTGAAATCTATGCCAGAGCCCTTACCTGAATTTTGTTCACAGCTCCTCCTTGGCATTGCTTCAAAAGCTGTTGCTAACCCTGTGCTTTCTGAGTTTGTTCAAAGCTTTATTCAGTTGAGAAACACACATCCGAACACAGGTTCTCAGGCCTCATCTGTTCCAGAGTCGAGCACACAGAATGTGGCCACTGAGTGTTCTATGCCTCCTCTAGATGCAGATTCAAAAGCTTCAAAGAATGATGGGTTTCATCAAGATGCTGTGTCAAAATCTCAATGCACTGGTTCTACTGATAAAGATAGAAAGATGGTTAACAGTGAGAGAGTGACAAAGAACATTGGTGTATCTGCACCTGTTGTTGATCCTCACGGCCTTCCTTTTGATTCTTTTGTTTCTGAATTTTCTGTTGAGAAACCAGCTATTGCTCTTTGCTGCAGCCCTGGAAAGGGGAAGGAAAAGCGCAATGATGCATTTCTTGATCCCCTCCAAGAAATGCATGCAAGTAAGCTTCCAGCATCGGTGGTCGATAATTCAAATTATTCACCCGCCACTTATATGGATGGTAGGTCTATTAACGAGTGCCCTTTCAGTGGAGTACCTGTGGCTCCTCAACGATCTATGCTTGGACCTGTAGGTATAGATCCAGTAAGAAATAGCAGCGGTTACACTGAATCTACGGGAAGTATGCTCCATAAAGGTCCAAAAATCTGCAGCAGTGGCTACATTGAAGCATTCCATGAAGATCCAATAATTAGCAGCAGAGGTTGCATTGGATCTGTGGGAAGTATGTTCCATAAAGGTGTTATTTGTGATGGCTGTGGAGCCCGTCCAATTACTGGTCCGCGGTTCAAGTCCCAAGTGAAAGATAATTATGATCTTTGTAGCATCTGCTTTGCTAAAATGGGCAATGAGGCTGACTACATTAGGATTGATCGTCCTGTCTCTTGCCGGCATCCAAGAATGAATGCATTCAACCGTAGATATCCATTTTCTGGCCCCCAAATAATTGATGCTATGAGGAGATCATCTTTAAAGCAGACCAAGCTTGATAGTAGCTTTGTAGCTGACGTTAATGTCTTTGATGGCACTGTGATAGCTCCAAGTACCCCATTTACCAAGATATGGCGATTACGTAATAGTGGGACTTCGAATTGGCCCCGTGGTACACAGCTAATGTGGACTGGAGGAGACAAGTTCAGTCATTCCTCATCGGTTGAAATAGCGGTTCCTGCTGATGGACTTCCTCTGGGCCAGGAAATTGAAATTGCAGTTGACTTTACTACCCCTCCACATTCTGGTCAATACACCTCATACTGGAGGATGGCATCTCCATCTGGCCAGAGATTTGGGCAACGTGTTTGGGTTCTTATTCAGGTTGATGAAGCACTTGGGATGCCGGATTCCAAATCTTCCCAAGCTTTGGACTTAAATTTACCCCCCATGCTCATAGGTCATGCCCATGAAGGTGTGGAAAATAATTCGACTCCTGAAATTTCTGATGGTGTCCCTTTCCCTCATGATCCCTTCTCCATTTTTGAACCGGTAAAACATGATCATGATCTGTCTGAGGATTTACAAATCCTTGTAGATCAGGGTATTCTAGTTGGTGAAAGCCCTGCTACTTTTGCGAATAAGGATAATTTGGGCTCGTCTTGCTCTGCTGTAGATCGTCATGGAGTTCTACCTTGTTCAACCAAGGTTGCCCCTGTGTCGTCATGCCCTTTTATTGATTTTCCTGTACCAACTCCACCTGCAAACCCACCTCCAACACCATCCCCTAAGGTTTCTCCAGCATCATCTGAAAATGTCACTGCCAATAATGCCAATAACATTGTTGAAGAAACTCTTCTTAAAACACTCGAGGATATGGGATTCAAACGGGTTGATCTAAACAAGGAAGTACTGAAGAGGAATGAGTACGATCTAGAGCTGTCGGTGGATGAACTCTGCGGAGTTTCTGAATGGGATCCGATGCTTGATGAGTTGGAGGAAATGGGATTCATTGACAAGGAAATGAACAAAAGACTTCTGATGAAGAACAATGGCAGCGTGAAGCGAGTAGTGATGGAACTTCTTTATGGGGAGAAGGCTTAGTTGAAGAAGGCTCATCTCAAAATTATGGATTAGGATGTAAATATATTTTACAACTAAATAAATCTATGGATATGACATTGTTGCTCTGGAACCAGGGATGTGTTTTATGTTTTGTTGGAGTGGTCTTTTGAGTCCTTTTTAGTTTATGTTCATCTCTGTCTTTTCTCTTTGCAAAGGTACATATGTGTCTTTCTAATTTTGGTTCAATTTAGTTATTATGTCATACTTGTGTTTCTCTTTTA 2994 41.35 MESTMVTKVRYGEMLRRFSVRVHENGRLDLDINGLREKIRNLFSFSSDDDFTMTYIDEDGDVVTLVNDDDLHELMRQQLKFLKIDVHLRNKENDQSGDRSDGSSTPMTSDRSYQNVCSGISDVLKSMPEPLPEFCSQLLLGIASKAVANPVLSEFVQSFIQLRNTHPNTGSQASSVPESSTQNVATECSMPPLDADSKASKNDGFHQDAVSKSQCTGSTDKDRKMVNSERVTKNIGVSAPVVDPHGLPFDSFVSEFSVEKPAIALCCSPGKGKEKRNDAFLDPLQEMHASKLPASVVDNSNYSPATYMDGRSINECPFSGVPVAPQRSMLGPVGIDPVRNSSGYTESTGSMLHKGPKICSSGYIEAFHEDPIISSRGCIGSVGSMFHKGVICDGCGARPITGPRFKSQVKDNYDLCSICFAKMGNEADYIRIDRPVSCRHPRMNAFNRRYPFSGPQIIDAMRRSSLKQTKLDSSFVADVNVFDGTVIAPSTPFTKIWRLRNSGTSNWPRGTQLMWTGGDKFSHSSSVEIAVPADGLPLGQEIEIAVDFTTPPHSGQYTSYWRMASPSGQRFGQRVWVLIQVDEALGMPDSKSSQALDLNLPPMLIGHAHEGVENNSTPEISDGVPFPHDPFSIFEPVKHDHDLSEDLQILVDQGILVGESPATFANKDNLGSSCSAVDRHGVLPCSTKVAPVSSCPFIDFPVPTPPANPPPTPSPKVSPASSENVTANNANNIVEETLLKTLEDMGFKRVDLNKEVLKRNEYDLELSVDELCGVSEWDPMLDELEEMGFIDKEMNKRLLMKNNGSVKRVVMELLYGEKA 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46789688 46794399 + XM_039038338.1 Bhi08g01660 41993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01660 819 Pfam Zinc finger, ZZ type 387 422 IPR000433 GO:0008270
Bhi08g01660 819 Pfam Ig-like domain from next to BRCA1 gene 480 581 IPR032350 -
Bhi08g01660 819 SUPERFAMILY RING/U-box 385 437 - -
Bhi08g01660 819 MobiDBLite consensus disorder prediction 92 113 - -
Bhi08g01660 819 MobiDBLite consensus disorder prediction 167 227 - -
Bhi08g01660 819 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 767 816 IPR015940 -
Bhi08g01660 819 Gene3D Immunoglobulins 465 585 IPR013783 -
Bhi08g01660 819 MobiDBLite consensus disorder prediction 167 188 - -
Bhi08g01660 819 ProSiteProfiles PB1 domain profile. 4 89 IPR000270 GO:0005515
Bhi08g01660 819 CDD UBA_NBR1 734 772 - -
Bhi08g01660 819 PANTHER PROTEIN JOKA2 1 187 - -
Bhi08g01660 819 PANTHER PROTEIN JOKA2 381 817 - -
Bhi08g01660 819 Gene3D - 776 816 - -
Bhi08g01660 819 SUPERFAMILY CAD & PB1 domains 1 86 - -
Bhi08g01660 819 Gene3D - 381 444 IPR043145 -
Bhi08g01660 819 CDD UBA_NBR1 776 814 - -
Bhi08g01660 819 Pfam PB1 domain 6 78 IPR000270 GO:0005515
Bhi08g01660 819 SMART PB1_new 4 89 IPR000270 GO:0005515
Bhi08g01660 819 Gene3D - 728 775 - -
Bhi08g01660 819 MobiDBLite consensus disorder prediction 99 113 - -
Bhi08g01660 819 Gene3D - 1 89 - -
Bhi08g01660 819 ProSiteProfiles Zinc finger ZZ-type profile. 387 437 IPR000433 GO:0008270
Bhi08g01660 819 CDD NBR1_like 469 582 IPR032350 -
Bhi08g01660 819 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 381 817 - -
Bhi08g01660 819 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 187 - -
Bhi08g01660 819 SUPERFAMILY UBA-like 776 815 IPR009060 GO:0005515
Bhi08g01660 819 SMART zz_5 386 431 IPR000433 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01660 K17987 NBR1; next to BRCA1 gene 1 protein - csv:101205935 1082.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01659 Bhi-Chr8:46789684 Bhi08g01660 Bhi-Chr8:46789688 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41