Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01689 TGGGTCTTCTTTCATTCTTTAATTTTTTTCGCGTCCATAGTCGCAGCACAAAGTCTTTAACCGCAGAAAAGCTCAAGCTTCTCCCAAAATGCCTCTCAAGACCGAACATGGAGCATCGGACAGCTCCCTTGATGAGCACTTGAAGGCGGTCCATACTTCTAAAGTCGTTGTTCTTGCTGACCTCAACGTTGATCCTCCAGAAATGGATGACGACAGTTCCGTTCACGTTTCAGCTTCGACTACCTCCAGGTTATCTATGGACGAGAGCAATCAAGACAAAACGGTGGCGATTTGCCAGGATACTAATACAATGGAAGTTGAAGGTAGACGTGTAAGCAAAATTGGAAAGTGCCGTTCAAGAAATAATAAGGTAGAGTACTCTCTTGATTCTGCAGCTGATGCAGATGGCGATCAACATGGTCAAGGTGTTTCAACTTCACGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTAGTTCATGTAGCAAGAAAGATGCCAAAAAATGCTCACGCTCATTTCATTCTTGGCCTAATGTACCAGAGGTTGGGCCAGCCCCAAAAGGCTGTTTTAGCATATGAGAAGGCAGAGGAGATCCTACTCCAAAGTGATGTTGAGATTCACAGGCCAGAGTTGCTCTCATTGGTCCAAATTCATCATGCACAGTGTCTCCTTCTAGAAAGTGCAGGGGATAATAGTTCAAACGAAGAACTTGAACAGGAGGAGCTTGATGAGATTTTTTCTAAACTTAAGCATTCAACGCAATCTGATGTTAGACAGGCAGCTGTGTGGAATACCCTAGGCTTGTTACTTCTTACAACTGGTCGAGTGAAGAGTGCTATTTCAGTGTTGTCGTCCCTGTTGGCCATTGTTCCTAACAACTATGATTGCCTTGGAAACCTTGGAATTGCTTATCTTCAAAGTGGAAATATGGAACTATCAGAAAAATGTTTTCAAGAATTGATCCTGACAGATCAAAATCATCCTGCTGCTCTCATAAACTATGCTGCTTTTCTCTTGTGCAAGTATGGTTCTACTGTTGTAGGTGCTGGAGCAAATGCTGGTGAAGGTGGTGTTGATGAGAAGCTTGTAGGTATGAATGTTGCAAAGGAATGCTTGCTAGCGACCCTTAAGGTAGATCCAAAAGCAGCACATGCCTGGGCAAATCTTGCTAATGCGTATTTCGTGACTGGGGATCACAGAAGTTCTGCCAAGTGCTTGGAGAAGGGAGCAAAACTGGAGCCAAATTGCATGTCTATGAGATATGCCGTTGCTATGCACCGACTTAAGGATGCAGAAAGATCCCAAGATCGTAGTGAGCAGCTCTCCTGGGCTGGAAATGAAATGGCCTCAATTATTAGAGATGGAGATGGAATGGCAATTGATCATCCTGTAGCATGGGCTGGGCTTTCCATGGTTCAAAAGACTCAACATGAAATTGCCGTGGGGTTTCGTACAGATCAGAGTGAACTGAGAGAAAAGGAAGAACACGCTTTTTACAGTTTAAATCAGGCAATAGCTGAGGACCCCGATGATGCTGTTCAGTGGCATCAATTCGGCCTCCATAACCTCTGTACACGAGAATTTAAAAAATCACAAAGATACCTCAAAGCTGCAATTGCCCGGTTTAAGAACTGTAGCTTTGCATGGTCAAACCTAGGTATCTCATTGCAACTCTCAGACAACCCGACACAGGCCGAAGAAGTATACAAGAAATCTCTGTCATTGGTGGCAACAGAACAAGCACACACCGTATTTTGTAACCTCGGAAATCTATATCGACAGCAAAAGCAGTATGAACGTGCCAAAGCTATGTTCTCAAAGTCTCTGGAACTGCAACCTGGCTATGCACCTGCATTTAACAATCTAGGATTAGTGTTTATTGCAGAGGGTCAATGGGAGGAGGCTAAGTATTGTTTTGAGAAAGCTCTTGAGGCTGATCCGTTACTCGATTCAGCTAACTCAAACTTGATTAAAACAGTAGCCGTATCTCGACTATGTAATAGTTTATCGTCGTGTCGTGTTAAAGATTGAAACTTCTGCCATTAGCTTCATCCTCATTTTGAGATTGGGATGTAGAATATGCATAATATTTTCTTGCAAGGAACTGTAGAGCAGCATTTACTCAATGAAGATGCTTCCTGGAGATTTCTTCCCAGGCTAACTTCCTTGA 2171 43.25 MPLKTEHGASDSSLDEHLKAVHTSKVVVLADLNVDPPEMDDDSSVHVSASTTSRLSMDESNQDKTVAICQDTNTMEVEGRRVSKIGKCRSRNNKVEYSLDSAADADGDQHGQGVSTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVLAYEKAEEILLQSDVEIHRPELLSLVQIHHAQCLLLESAGDNSSNEELEQEELDEIFSKLKHSTQSDVRQAAVWNTLGLLLLTTGRVKSAISVLSSLLAIVPNNYDCLGNLGIAYLQSGNMELSEKCFQELILTDQNHPAALINYAAFLLCKYGSTVVGAGANAGEGGVDEKLVGMNVAKECLLATLKVDPKAAHAWANLANAYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLKDAERSQDRSEQLSWAGNEMASIIRDGDGMAIDHPVAWAGLSMVQKTQHEIAVGFRTDQSELREKEEHAFYSLNQAIAEDPDDAVQWHQFGLHNLCTREFKKSQRYLKAAIARFKNCSFAWSNLGISLQLSDNPTQAEEVYKKSLSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKSLELQPGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLIKTVAVSRLCNSLSSCRVKD 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47790145 47797333 + XM_039038833.1 Bhi08g01689 42022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01689 647 ProSiteProfiles TPR repeat region circular profile. 553 584 - -
Bhi08g01689 647 SUPERFAMILY TPR-like 463 618 IPR011990 GO:0005515
Bhi08g01689 647 SUPERFAMILY TPR-like 134 408 IPR011990 GO:0005515
Bhi08g01689 647 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 10 645 - -
Bhi08g01689 647 Pfam Tetratricopeptide repeat 242 300 - -
Bhi08g01689 647 ProSiteProfiles TPR repeat profile. 231 264 IPR019734 GO:0005515
Bhi08g01689 647 SMART tpr_5 587 620 IPR019734 GO:0005515
Bhi08g01689 647 SMART tpr_5 140 173 IPR019734 GO:0005515
Bhi08g01689 647 SMART tpr_5 265 298 IPR019734 GO:0005515
Bhi08g01689 647 SMART tpr_5 553 586 IPR019734 GO:0005515
Bhi08g01689 647 SMART tpr_5 517 550 IPR019734 GO:0005515
Bhi08g01689 647 SMART tpr_5 231 264 IPR019734 GO:0005515
Bhi08g01689 647 SMART tpr_5 354 387 IPR019734 GO:0005515
Bhi08g01689 647 SMART tpr_5 483 516 IPR019734 GO:0005515
Bhi08g01689 647 MobiDBLite consensus disorder prediction 99 120 - -
Bhi08g01689 647 Pfam Tetratricopeptide repeat 140 169 IPR019734 GO:0005515
Bhi08g01689 647 Pfam Tetratricopeptide repeat 354 387 IPR019734 GO:0005515
Bhi08g01689 647 Gene3D Tetratricopeptide repeat domain 429 633 IPR011990 GO:0005515
Bhi08g01689 647 Gene3D Tetratricopeptide repeat domain 118 314 IPR011990 GO:0005515
Bhi08g01689 647 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515
Bhi08g01689 647 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 10 645 - -
Bhi08g01689 647 Gene3D Tetratricopeptide repeat domain 330 425 IPR011990 GO:0005515
Bhi08g01689 647 ProSiteProfiles TPR repeat profile. 553 586 IPR019734 GO:0005515
Bhi08g01689 647 ProSiteProfiles TPR repeat profile. 587 620 IPR019734 GO:0005515
Bhi08g01689 647 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515
Bhi08g01689 647 Pfam Tetratricopeptide repeat 554 616 - -
Bhi08g01689 647 ProSiteProfiles TPR repeat region circular profile. 587 618 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01689 - - - csv:101210395 1169.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01688 Bhi-Chr8:47790143 Bhi08g01689 Bhi-Chr8:47790145 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32