Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01997 TTAAACATGAACGCCATTGACAGATGCTGGAGATCGAACCCATATTGGAGAAGAAACAGGCAACAATTAGCCATTTGCTCAATTGGGTTCGCTGGAAAAATGACCAATAACATTGGAAGAAATCTCATACAATACCAAGTCACGGACCCTAGTGATGACCCTACAAACCCACGTCCAGGTACACTAAGATACGGCGCCACAATGATCAAGTCCAAAGTCTGGATCACATTCCGAAAAGACATGCATATTGTGCTTAAGAAGCCGCTTCTTATTAGCAGCTTCACCGCCATCGACGGCCGAGGCGCCACCGTCCACATCACCGGGAATGCGTGTCTGATGGTGTTCAAGGCCACCAACATTATAATCCACGGCCTTATCATCCACCACTGTAGGGCTCAGGCGGCGGGTCAAGTCATGGGCCCCAATTCCAAGATCATTACGCTTGGACACGTGGACGGCGATGCCATCCGTTTAGTAACGGCCTCAAAAGTGTGGATTGACCACAACACACTGTACCGTTGTGAGGATGGGTTGCTTGACGTCACTCGTGGGTCCACTGACATCACCATTTCTAACAATTGGTTCCGAGACCAAGATAAGGTTATTCTTCTTGGCCATGATGACGGTTATGTCCGAGATCGGAACATGAGAGTCACTGTTGTCTATAACCATTTTGGACCAAATTGCAACCAAAGAATGCCTAGGATCCGATATGGGTATGCACATGTGGCGAACAATTTGTATCAAGGTTGGACGCAATATGCAATTGGAGGAAGCATGAATCCGAGTGTGAAGAGTGAAGCCAACCTTTTCATTGCATCAAAGTCAAAACAGATTATATGGAGCACAGGGAAAGTAGAGCAGGCGAAATGGAAGTTTCATTCGGTAAGAGACGTATTTGAAAACGGAGCTTTATTTGCACAAATTGGTAGTGGGAGAGGAAATGTAAAACCAAATTACAACGCCCAACAACGGTTTCCAGTTGCAGATGCCAAATGGCTCAGATCATTGACAAGCAACTCCGGAGCATTGCAGTGA 1038 46.44 MNAIDRCWRSNPYWRRNRQQLAICSIGFAGKMTNNIGRNLIQYQVTDPSDDPTNPRPGTLRYGATMIKSKVWITFRKDMHIVLKKPLLISSFTAIDGRGATVHITGNACLMVFKATNIIIHGLIIHHCRAQAAGQVMGPNSKIITLGHVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRNMRVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIIWSTGKVEQAKWKFHSVRDVFENGALFAQIGSGRGNVKPNYNAQQRFPVADAKWLRSLTSNSGALQ 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 57583258 57584587 + XM_039040090.1 Bhi08g01997 42330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01997 343 SMART amb_all 78 275 IPR002022 -
Bhi08g01997 343 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Bhi08g01997 343 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Bhi08g01997 343 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Bhi08g01997 343 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Bhi08g01997 343 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Bhi08g01997 343 PRINTS Pollen allergen Amb family signature 321 343 IPR018082 -
Bhi08g01997 343 Gene3D - 1 343 IPR012334 -
Bhi08g01997 343 PANTHER PECTATE LYASE 1 343 - -
Bhi08g01997 343 Pfam Pectate lyase 91 269 IPR002022 -
Bhi08g01997 343 PANTHER PECTATE LYASE 18-RELATED 1 343 IPR045032 GO:0030570
Bhi08g01997 343 SUPERFAMILY Pectin lyase-like 1 341 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01997 Bhi-Chr8:57583258 Bhi08g01809 Bhi-Chr8:52595514 4.87E-108 dispersed
Bhi08g01997 Bhi-Chr8:57583258 Bhi08g01998 Bhi-Chr8:57583261 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01997 K01728 - csv:101217103 661.759