Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g01998 AACATGAACGCCATTGACAGATGCTGGAGATCGAACCCATATTGGAGAAGAAACAGGCAACAATTAGCCATTTGCTCAATTGGGTTCGCTGGAAAAATGACCAATAACATTGGAAGAAATCTCATACAATACCAAGTCACGGACCCTAGTGATGACCCTACAAACCCACGTCCAGGTACACTAAGATACGGCGCCACAATGATCAAGTCCAAAGTCTGGATCACATTCCGAAAAGACATGCATATTGTGCTTAAGAAGCCGCTTCTTATTAGCAGCTTCACCGCCATCGACGGCCGAGGCGCCACCGTCCACATCACCGGGAATGCGTGTCTGATGGTGTTCAAGGCCACCAACATTATAATCCACGGCCTTATCATCCACCACTGTAGGGCTCAGGCGGCGGGTCAAGTCATGGGCCCCAATTCCAAGATCATTACGCTTGGACACGTGGACGGCGATGCCATCCGTTTAGTAACGGCCTCAAAAGTGTGGATTGACCACAACACACTGTACCGTTGTGAGGATGGGTTGCTTGACGTCACTCGTGGGTCCACTGACATCACCATTTCTAACAATTGGTTCCGAGACCAAGATAAGGTTATTCTTCTTGGCCATGATGACGGTTATGTCCGAGATCGGAACATGAGAGTCACTGTTGTCTATAACCATTTTGGACCAAATTGCAACCAAAGAATGCCTAGGATCCGATATGGGTATGCACATGTGGCGAACAATTTGTATCAAGGTTGGACGCAATATGCAATTGGAGGAAGCATGAATCCGAGTGTGAAGAGTGAAGCCAACCTTTTCATTGCATCAAACACAGGGAAAGTAGAGCAGGCGAAATGGAAGTTTCATTCGGTAAGAGACGTATTTGAAAACGGAGCTTTATTTGCACAAATTGGTAGTGGGAGAGGAAATGTAAAACCAAATTACAACGCCCAACAACGGTTTCCAGTTGCAGATGCCAAATGGCTCAGATCATTGACAAGCAACTCCGGAGCATTGCAGTGA 1014 46.84 MNAIDRCWRSNPYWRRNRQQLAICSIGFAGKMTNNIGRNLIQYQVTDPSDDPTNPRPGTLRYGATMIKSKVWITFRKDMHIVLKKPLLISSFTAIDGRGATVHITGNACLMVFKATNIIIHGLIIHHCRAQAAGQVMGPNSKIITLGHVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRNMRVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASNTGKVEQAKWKFHSVRDVFENGALFAQIGSGRGNVKPNYNAQQRFPVADAKWLRSLTSNSGALQ 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 57583261 57584587 + XM_039040092.1 Bhi08g01998 42331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g01998 336 PANTHER PECTATE LYASE 18-RELATED 1 336 IPR045032 GO:0030570
Bhi08g01998 336 PANTHER PECTATE LYASE 1 336 - -
Bhi08g01998 336 Pfam Pectate lyase 90 269 IPR002022 -
Bhi08g01998 336 SUPERFAMILY Pectin lyase-like 1 334 IPR011050 -
Bhi08g01998 336 Gene3D - 1 336 IPR012334 -
Bhi08g01998 336 SMART amb_all 78 275 IPR002022 -
Bhi08g01998 336 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Bhi08g01998 336 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Bhi08g01998 336 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Bhi08g01998 336 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Bhi08g01998 336 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01998 Bhi-Chr8:57583261 Bhi08g01809 Bhi-Chr8:52595514 1.20E-107 dispersed
Bhi08g01997 Bhi-Chr8:57583258 Bhi08g01998 Bhi-Chr8:57583261 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g01998 K01728 - csv:101217103 639.417