Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g02014 CCCATATTTATTTATCTTCTCTTCAACTTCTGACGATCTACATTATTGAGACCCACCAAGATCTAATTAAGAGATATCATTTTGAGTGATGGAAGGAAATGACCAACTTCACTATCACCAAAACCATCGCTCGACTACTTCTTTTCCTCTTCAATTGTTAGAGAAGAAGGAATATGATAATCCTCAACCTCCTCTTGAGATCATCTCTAAGAAGCCCTCTCCTAAGAGAACCTCTACTAAGGACCGTCACACCAAAGTCGATGGCCGCGGTCGTCGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTCCAGCTTACTCGTGAGCTCGGCCACAAGTCCGATGGCGAAACCATCGAATGGCTTCTTCAGCAGGCCGAGCCTGCTGTTATTGCCGCTACCGGTACAGGGACCATACCTGCAAACTTTAACTCTCTCAATACCTCACTAAGAAGATCGGCTACAAGCATTTCTCTACCATCTCAACTAAGATCCTCGTCTTACTACCACCCGGGAGTGATGGGGATCAACTCTGAAGCAATGAATAATATGGCTCAAATGACTCAACCAAAACAAGATCATCACTATCTCCAACAATCCACCACAGGGCTAATCCCTGCCACTACTCCGGCCAACTTTTGGATGCTTTCCGACCCCAACAACCAATTACTCGGCAGCGGAGGCGACCCTTTATGGAGGCTTCAGTCGGCCAACAACCAAGACGGCGCTTTATTCAGATCAGGGCAACCCTCCGGTGGTTTACGTTTTTCGAATCTGGCTGCTCCGTTGACGCTCCTCCCAGGAAAGCCACTCTCATTGGGACCCACTACTGCCGGAGGTGGACGTGGAACCATGAATGATGATGGGCACTTGAATATTTACGCCGCCCAAAATCCGCCGCATGGGGCGGCGCCCGACACCGGTGTCTCCTAATCATAATTGTTGCCTATGCGGCTTTCCTTACTAATTTCTTCATATATGAATATGGTTTGAGACGTGAGGTTAGACATGTGATT 1017 47.98 MEGNDQLHYHQNHRSTTSFPLQLLEKKEYDNPQPPLEIISKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGINSEAMNNMAQMTQPKQDHHYLQQSTTGLIPATTPANFWMLSDPNNQLLGSGGDPLWRLQSANNQDGALFRSGQPSGGLRFSNLAAPLTLLPGKPLSLGPTTAGGGRGTMNDDGHLNIYAAQNPPHGAAPDTGVS 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 57971965 57973835 - XM_039039442.1 Bhi08g02014 42347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g02014 281 MobiDBLite consensus disorder prediction 44 60 - -
Bhi08g02014 281 ProSiteProfiles TCP domain profile. 50 104 IPR017887 -
Bhi08g02014 281 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 161 270 IPR005333 GO:0003700
Bhi08g02014 281 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 159 IPR005333 GO:0003700
Bhi08g02014 281 MobiDBLite consensus disorder prediction 243 281 - -
Bhi08g02014 281 Pfam TCP family transcription factor 48 158 IPR017887 -
Bhi08g02014 281 PANTHER TRANSCRIPTION FACTOR TCP23 38 159 - -
Bhi08g02014 281 PANTHER TRANSCRIPTION FACTOR TCP23 161 270 - -
Bhi08g02014 281 MobiDBLite consensus disorder prediction 1 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g02014 - - - csv:101218047 462.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00330 Bhi-Chr2:6136733 Bhi08g02014 Bhi-Chr8:57971965 4.83E-19 dispersed
Bhi03g01548 Bhi-Chr3:33295457 Bhi08g02014 Bhi-Chr8:57971965 4.84E-37 dispersed
Bhi08g02014 Bhi-Chr8:57971965 Bhi12g02424 Bhi-Chr12:76496895 2.00E-37 dispersed
Bhi08g02014 Bhi-Chr8:57971965 Bhi07g01576 Bhi-Chr7:45137800 1.44E-64 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi12g01178 . 43 260 TCP Transcription Factor Family AT5G23280 64.0 7.9e-66 248.1
Bhi07g01106 . 39 261 TCP Transcription Factor Family AT5G23280 62.4 2.3e-65 246.5
Bhi07g01576 . 57 156 TCP Transcription Factor Family AT3G47620 89.2 8.3e-43 172.6
Bhi08g02014 . 38 138 TCP Transcription Factor Family AT3G47620 82.2 2.5e-39 161.0
Bhi01g02112 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi01g02113 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi01g02114 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi12g02424 . 26 254 TCP Transcription Factor Family AT3G27010 52.4 7.4e-53 205.3
Bhi12g01178 . 31 261 TCP Transcription Factor Family AT5G08330 60.9 1.1e-64 244.2
Bhi07g01106 . 9 259 TCP Transcription Factor Family AT5G08330 56.8 1.4e-64 243.8
Bhi02g00091 CCT 35 136 TCP Transcription Factor Family AT5G60970 73.8 7.0e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1763 PF03634 TCP 3.20E-36 No_clan Bhi TF