Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi08g02111 AAAAGGAAGGGTAAAATAGTCAATTCACATTTTTAAAGTTGGCGATTAAATTATGAATAAAGAAAAAGAAAGTTTGGCAGGGGAAACGGAAAGACACAGAGAAGACAGGGACCGGTGAAAATATGCTAATCCAAAAACAAAAGCGAGAAAATTCCAAGCTAAACACAGAGATGGATTGTGAATCCGCGACAAGTGATGACGACGACTCATTTCTTGGAAGATAAAATCCAAAATCGAAGGAGCTCCTCTTTCGAAATAGACGTACGGAAGTTCTTTCCAGCAAAGAACCAAGCAATACAATCACCAGCTTCTCCCTTACTTTCTCTGAACAACCCTTCAATTACACTTCAAATCTTGCGTTTACAGTCATGGAGAAGAATCGGAGTGCCGAAAGAGGAATGGCAGCGTTTTCTTCTTCAGCTGATAGCAATACTAGGGCTCGTCCTACCACCACCACCATTAGCACCGACAACAGACTTGCTGCACTTGTTCAATATAATGCCGATGCTGGTCTTTTGAACCAGTTTGAGCTCTCGGATGCATCTGGTGAGTCTTTTAATTATTCCAGATCAGTTCTTGAAGCTCCCGTGTCCGTACCTGAAGAACAAATTACTGCTTATTTGTCTAAGATTCAGAGGGGTCGGTTGGTTCAATCGTTTGGTTGTTTGCTTGCGATTGAAGAATCTAGTTTTAAGATTGTTAGCTTTAGTGAGAATTGTTTTGAATTACTAGGGCTAAGTGATCAATTTGGATCCGCAAAGGGGAAAGGTCTGATTGGGGTTGATATGAGAGCTTTGTTTACGCCTTCCTCTGGTGCTTCTTTGGCCAAAGCAGCTTCGTCTAGGGAGATTTCGATGTTGAATCCTGTTTGGGTTTATTCTAGGACTACCCAGAAGCCATTTTATGCTATATTGCATAGAATTGATGTGGGGATTGTTGTTGATTTAGAGCCTGCACGGTCTGTTGATCCTGCATTGTCGGTTGCAGGTGCTGTGCAGTCACAGAAACTTGCAGTTAGAGCGATTTCCAGGTTGCAGGCTCTACCTAGTGGTGATATTGGTGTTTTATGTGATACGGTTGTCGAAGATGTTCAAAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAATTCCATGATGACGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCAGACTTAGAGCCATACCTCGGTTTGCATTATCCTGCCATTGATATACCTCAAGCGGCTCGTTTTTTGTTTAAGCAAAATCGCATCAGGATGATTTGTGATTGCCACGCGAAGCCTGTGCAGGTCATTCAAAGTGATGAACTAAAGCAGCCTCTTTGTTTGGTGAATTCAACGTTAAGAGCACCACATAGCTGTCATTTGCAATACATGGCAAATATGAGTTCCTTAGCTTCATTAGCGATGGCAATAATCATGAACAGTGATGACTCACCAACAAGGCTATGGGGCCTGGTAGTGTGCCACCATACTTCTCCTCGATATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTTCTCATGCAAGCGTTTGGGCTGCAACTTTACATGGAACTTCAATTGGCATTACAATTAACAGAGAAAAAGATCCTCAAAACACAAACTTTACTTTGTGACATGCTTCTCCGAGGCTCCCCATATGCAGTCCTGTCTCAGTCTCCTAGTATAATGGATCTCGTGAAGTGCGATGGTGCTGCATTGTACTATAACGGGGCATGTTGTTTGTTAGGTGTAACTCCAACCGAAGCACAAGTCAAAGATCTTGCAGAGTGGATACTCAATAACCATGGGGATTCTACAGGGCTGAGCACAGATAGTTTGGCTGATGTTGGCTACCCTGAAGCTGCTTCACTAGGTAATGCGGTGTGTGGTATGGCAGCTGCAAGAATCACTTCAAAGGATTTCTTATTCTGGTCTAGGTCCCATGTTGCAAAGGAAATTCAATGGGGAGGAGCCAAGCATCGTCCGGATGATAAGGATGATTGTGGAAGAATGCATCCGAGATCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAGAAGTTTGTCTTGGGAAGTTCAAGAAATAAATGCTATTCACTCTTTGCAGCTCATAATGAGGGAGTCTTTTTCGAATGCTACGGACAGTAATTCTAAGGCAGAAATTTCTGTCCAGTTGAGTGATGCTGAGATCCAGGATATTAATGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGGTTGATTGAAACAGCAACCGTTCCAATTTTTGGGGTTGACTCAAGTGGTTTGATCAATGGATGGAATGCTAAAATTTCTGAACTTGTGGGACTACAATCTGGAGAAGCTATGGGGAAATCTTTGGTTAATGAAATTGTTCATGAAGATTCACGTGGAACTGTGGAAGATTTACTTTTCTCTGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAACTGAGAAGTTTTGGAACTGATAAAGAAAAGTTGAACGTGTATATTATAGTTAATGCTTGCACAAGTAGAGATTACACAAACAAAGTTGTTGGAGTTTGCTTTGTTGGGCAAGATCTTACCTCTGAGAAAGGTGTGATGGATAAATTTATCCGTCTGCAGGGAGATTATAAGACTATTATTGAAAGTCTGAGTCCATTGATTCCTCCCATGTTTGTTTCAGACGAGAATGGTTACTGCTGTGAATGGACTATAGCCATGGAAAAACTTACTGGTTGGAACAAAAATGAAGTTATAGGAAAAATGCTAGTTGGGGAGATCTTTGGGAATTTGTGTAGGTTGAAAGGTCTAGATACCCTCACTAGGTTTATGATTATATTATATCAAGGTATTAGTGGTGAAGTAACCGAAAAGTTTCCATTAGGATTTTTCAACAAGGATGGGAATTATGTGGATGTGCTCTTAACATCGAACAAGAGAATTGATGCTGAAGGAAAAGCCATTGGTTGTATTTGCTTCTTGCAAATTGTTGAGCCCAACTTACATGGGGTCTTAGAAGGACTTGGGACAAGTGATAGAGAGAGCATTCTGGAGCATAAGGAGTTGAGCTTCTTAAAGCATGAGATGAAAAATCCTTTGAATGGACTCAGATTTACTCATGAACTCATTGAAAATTCTGGCATTACGGAAAACCAAAAACTCTTTCTTGATACTAGTGATGCATGCGAGAGGCAAATTAGGACAATAATAGAGGATATGGACTTCAGAAGTCTAGAAGGAGGGCTATCATCTTGCCAAGTAGAGATAAAGAGAGAAGAATTTGTCTTTGGGAGTGTTCTGGATGCCATTATCTGTCAAATTATGATTGTGGTCAGAGAGAGGAATATTCAACTTTTTCATGAAATTCCAGAAGAAATCAAAACATTAACTCTATATGGTGATCAAATTAAGCTTCAGTTGGTTTTGTCCGATTTCTTACTTAATGTAGTCCAGTATGCGCCTGTTCTGGATGGTTGGGTTGAAATCAAAATTACTTCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCATTTGCAGATCAGAATGTCACATCCAGGTCAAGGTCTGCCTCCGGAACTAATCCAAGATATGGTTGGAGGACAACAGTGGACTTCAGAACAAGGCCTGGCCCTAAACTTGTCATGTAGACTTCTTAATAAATTGAACGGTAATGTTCGCTATGTTAGAGAGCAAACCAAATGTTACTTCCTCATTAATCTTGAACTCAAGTTAAGGCACCCAAGGGGGTCGATGGAAGCTACTACGAGTCGAAGGGCTTGAGTTTCTCCTCTTGAGCTGATGAACACTTGTTCAAATAGAATTGAGAACCCTTCTTCCAAAGATGCACATGATGTTGAGCCTGGACATTGCAGAAACCCAGTAGATCCTCAACATGTTCATGTCACTTAATAAACGAAAGCATACAATGAGCCCATTTTTTTATTGCGGCGACGTTGGATGGTTGGATTTGATGTGAAAATTGTAAGCAATATGTTTGTAAATCATAAGTTGGATTTACAAGTTGTGTGAAGCTCTGCCTATATCAGTGGTTGTCGATTCAGGTGCATGTTTCAGCAATGTGGCAGTGTACATGAAACATGCAGTTTTGTTTGTTCTGTTATGGATGTGAAAGCCATACATTGTAATATATTTGAGTATTGTGCTTATTCTGGCACTTTTTATGACTCATA 4183 40.47 MEKNRSAERGMAAFSSSADSNTRARPTTTTISTDNRLAALVQYNADAGLLNQFELSDASGESFNYSRSVLEAPVSVPEEQITAYLSKIQRGRLVQSFGCLLAIEESSFKIVSFSENCFELLGLSDQFGSAKGKGLIGVDMRALFTPSSGASLAKAASSREISMLNPVWVYSRTTQKPFYAILHRIDVGIVVDLEPARSVDPALSVAGAVQSQKLAVRAISRLQALPSGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRIRMICDCHAKPVQVIQSDELKQPLCLVNSTLRAPHSCHLQYMANMSSLASLAMAIIMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLALQLTEKKILKTQTLLCDMLLRGSPYAVLSQSPSIMDLVKCDGAALYYNGACCLLGVTPTEAQVKDLAEWILNNHGDSTGLSTDSLADVGYPEAASLGNAVCGMAAARITSKDFLFWSRSHVAKEIQWGGAKHRPDDKDDCGRMHPRSSFKAFLEVAKSRSLSWEVQEINAIHSLQLIMRESFSNATDSNSKAEISVQLSDAEIQDINELSSVACEMVRLIETATVPIFGVDSSGLINGWNAKISELVGLQSGEAMGKSLVNEIVHEDSRGTVEDLLFSALQGKEDKNVELKLRSFGTDKEKLNVYIIVNACTSRDYTNKVVGVCFVGQDLTSEKGVMDKFIRLQGDYKTIIESLSPLIPPMFVSDENGYCCEWTIAMEKLTGWNKNEVIGKMLVGEIFGNLCRLKGLDTLTRFMIILYQGISGEVTEKFPLGFFNKDGNYVDVLLTSNKRIDAEGKAIGCICFLQIVEPNLHGVLEGLGTSDRESILEHKELSFLKHEMKNPLNGLRFTHELIENSGITENQKLFLDTSDACERQIRTIIEDMDFRSLEGGLSSCQVEIKREEFVFGSVLDAIICQIMIVVRERNIQLFHEIPEEIKTLTLYGDQIKLQLVLSDFLLNVVQYAPVLDGWVEIKITSGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGQQWTSEQGLALNLSCRLLNKLNGNVRYVREQTKCYFLINLELKLRHPRGSMEATTSRRA 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 60973147 60979007 + XM_039038240.1 Bhi08g02111 42444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi08g02111 1134 CDD PAS 626 696 IPR000014 -
Bhi08g02111 1134 ProSiteProfiles PAS repeat profile. 615 686 IPR000014 -
Bhi08g02111 1134 SMART HKATPase_4 1006 1117 IPR003594 -
Bhi08g02111 1134 Gene3D PAS domain 763 873 - -
Bhi08g02111 1134 CDD PAS 760 868 IPR000014 -
Bhi08g02111 1134 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Bhi08g02111 1134 CDD HATPase_Phy-like 1005 1117 IPR044767 -
Bhi08g02111 1134 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 962 1116 IPR036890 -
Bhi08g02111 1134 SUPERFAMILY GAF domain-like 408 585 - -
Bhi08g02111 1134 Gene3D PAS domain 616 737 - -
Bhi08g02111 1134 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Bhi08g02111 1134 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Bhi08g02111 1134 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Bhi08g02111 1134 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Bhi08g02111 1134 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Bhi08g02111 1134 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Bhi08g02111 1134 PRINTS Phytochrome signature 618 634 IPR001294 GO:0006355|GO:0009584
Bhi08g02111 1134 PRINTS Phytochrome signature 637 652 IPR001294 GO:0006355|GO:0009584
Bhi08g02111 1134 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355|GO:0009584
Bhi08g02111 1134 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355|GO:0009584
Bhi08g02111 1134 Pfam Phytochrome region 413 588 IPR013515 GO:0006355|GO:0009584
Bhi08g02111 1134 TIGRFAM sensory_box: PAS domain S-box protein 622 737 IPR000014 -
Bhi08g02111 1134 Gene3D - 405 578 IPR043150 -
Bhi08g02111 1134 Pfam PAS fold 618 732 IPR013767 GO:0006355
Bhi08g02111 1134 Pfam PAS fold 749 868 IPR013767 GO:0006355
Bhi08g02111 1134 MobiDBLite consensus disorder prediction 10 29 - -
Bhi08g02111 1134 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 390 IPR016132 -
Bhi08g02111 1134 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1116 IPR003594 -
Bhi08g02111 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 865 IPR035965 -
Bhi08g02111 1134 Gene3D - 968 1122 IPR036890 -
Bhi08g02111 1134 SMART HisKA_10 890 954 IPR003661 GO:0000155|GO:0007165
Bhi08g02111 1134 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Bhi08g02111 1134 Gene3D PAS domain 87 332 - -
Bhi08g02111 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 621 729 IPR035965 -
Bhi08g02111 1134 SUPERFAMILY GAF domain-like 209 396 - -
Bhi08g02111 1134 SMART pas_2 748 818 IPR000014 -
Bhi08g02111 1134 SMART pas_2 617 684 IPR000014 -
Bhi08g02111 1134 Pfam GAF domain 229 400 IPR003018 GO:0005515
Bhi08g02111 1134 ProSiteProfiles Histidine kinase domain profile. 897 1119 IPR005467 -
Bhi08g02111 1134 PIRSF Phytochrome_conventional 15 1127 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bhi08g02111 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 88 197 IPR035965 -
Bhi08g02111 1134 CDD HisKA 895 950 IPR003661 GO:0000155|GO:0007165
Bhi08g02111 1134 SMART gaf_1 229 410 IPR003018 GO:0005515
Bhi08g02111 1134 Pfam His Kinase A (phospho-acceptor) domain 896 954 IPR003661 GO:0000155|GO:0007165
Bhi08g02111 1134 Gene3D - 210 561 IPR029016 -
Bhi08g02111 1134 PANTHER TWO-COMPONENT HISTIDINE KINASE 37 1123 - -
Bhi08g02111 1134 PANTHER PHYTOCHROME E 37 1123 - -
Bhi08g02111 1134 MobiDBLite consensus disorder prediction 1 29 - -
Bhi08g02111 1134 Pfam PAS fold 83 196 IPR013654 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01090 Bhi-Chr1:20690762 Bhi08g02111 Bhi-Chr8:60973147 0 dispersed
Bhi05g01474 Bhi-Chr5:50967161 Bhi08g02111 Bhi-Chr8:60973147 0 dispersed
Bhi05g01475 Bhi-Chr5:50967161 Bhi08g02111 Bhi-Chr8:60973147 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi08g02111 K12123 - csv:101214900 2029.22