Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g00226 TCAAAATATGTGTTAAAACGGCAAGCGGGGGACATTCAGAGGCACGTCTGTCGCTAGTTTCTAGAACCTTCTTTCTTCTCTCCGAGCTCAATCCGCCGTTGATCCCAATTGGTTTAGATCGCATCTTCAACCCTCCCCTACCCGAGGAGAGATCATCCACCTGAAAAGCAATGTGATCGTCGATCTTCTTCTTTTCAAAGCTACTTCGCACCAGAACAAGGAGATTGCATTCATCGTGTTGCGGATTTTGTGTTCGTCTGTTGGATTATCCACTCCCTTTGATGTGAGATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACACAATCTGTGCAAGACCAGGAACATCATGACTTGCATTATATGAGTAATGGGGATGGATTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGGGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGTGGCGATAACTGCGACCAGCTCAGCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCCGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCATGAAGTACCTTTGCGTGTTCCGTCAATCCCAATAACCAATCAACAAAATGATAGGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGAAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATTGGCCATAGCAAGTTGGGAACCAAATGAGGGTTGGAGTAATGATGGAAATGGATCCCAACAACAGGAGATTCTTTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCAGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTCCGGGACCTCTCAAAAGCTCCAAATCAAGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCTGAGTCCAACCCAAATGGTGTTTAGAATTGTGACAGATGTTTATGATTCCTGCTGCAGAATTTAGCAAAAATCATACGTATCTCCTACAGAGATTAGTTTGAAACGGGTTAATCGACATTTGACAGATTTAAAATTTCACTGATGGATATGAATATTCACACCCATCGACAGAGAAACCCTTGTTTATCTTCTAAGCTGGCTAATTCATCTTGGAATCAAGGGCACCGTGTACGCGTACTAATTTATTGGCCTCTTGTTTTATCATACTGCGAACCATTTCAAATTATCAATTCCTAGAATCTTGTAAATTATCATTTCCTGCGGGTGTACAATGGACGTTTTTTTTAAAATCCGATTCTATTTTTGTCCTG 1520 43.09 MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGDGLADEHENEGHGIMVGEREVQSDHGDLAENRGVMVDRGGDNCDQLSLSYQGQVYVFDSVSPEKVQAVLLLLGGHEVPLRVPSIPITNQQNDRALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNEGWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQTATFNRNENAVQNGDSESNPNGV 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4919810 4924670 - XM_039042355.1 Bhi09g00226 42843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g00226 294 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Bhi09g00226 294 ProSiteProfiles GATA-type zinc finger domain profile. 216 277 IPR000679 GO:0006355|GO:0043565
Bhi09g00226 294 PANTHER GATA TRANSCRIPTION FACTOR 28 4 281 - -
Bhi09g00226 294 CDD ZnF_GATA 222 277 IPR000679 GO:0006355|GO:0043565
Bhi09g00226 294 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515
Bhi09g00226 294 Gene3D - 212 280 IPR013088 GO:0006355|GO:0008270
Bhi09g00226 294 SMART GATA_3 216 269 IPR000679 GO:0006355|GO:0043565
Bhi09g00226 294 ProSitePatterns GATA-type zinc finger domain. 222 249 IPR000679 GO:0006355|GO:0043565
Bhi09g00226 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 280 - -
Bhi09g00226 294 MobiDBLite consensus disorder prediction 263 294 - -
Bhi09g00226 294 SMART tify_2 78 113 IPR010399 -
Bhi09g00226 294 Pfam CCT motif 146 188 IPR010402 GO:0005515
Bhi09g00226 294 PANTHER GATA TRANSCRIPTION FACTOR 28 4 281 IPR045280 GO:0006355
Bhi09g00226 294 Pfam GATA zinc finger 222 258 IPR000679 GO:0006355|GO:0043565
Bhi09g00226 294 Pfam tify domain 84 112 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g00226 - - - cmo:103500623 565.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01395 Bhi-Chr4:35144633 Bhi09g00226 Bhi-Chr9:4919810 1.12E-72 dispersed
Bhi04g01396 Bhi-Chr4:35144811 Bhi09g00226 Bhi-Chr9:4919810 2.78E-72 dispersed
Bhi05g00918 Bhi-Chr5:32241302 Bhi09g00226 Bhi-Chr9:4919810 1.85E-73 dispersed
Bhi05g00919 Bhi-Chr5:32241302 Bhi09g00226 Bhi-Chr9:4919810 1.85E-73 dispersed
Bhi09g00226 Bhi-Chr9:4919810 Bhi09g00228 Bhi-Chr9:4919810 0 dispersed
Bhi09g00226 Bhi-Chr9:4919810 Bhi09g00227 Bhi-Chr9:4919810 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g1014 . . . . . . . . Cmo08g00819 Cmo17g00616 . . . . . Cpe12g00537 Cpe17g00409 . . . . . . . . . . . . . . . . . . Lsi02g02837 Csa07g02285 . Cme01g02738 . . . . . . . . . . . Cma08g00850 Cma17g00633 Car08g00734 Car17g00597 . . Bhi09g00226 . . . . . . Cla09g00147 Cam09g0160 Cec09g0164 Cco09g0161 Clacu09g0166 . Cre09g0151 . . Chy01g02108 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi12g02239 . 1 180 Tify Gene Family AT4G14713 53.1 2.1e-46 183.3
Bhi12g02238 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02237 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02236 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02235 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1802 PF06203 CCT 8.30E-15 CL0281 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi09g00226 Bhi_Chr09 FPKM 8.911659 11.530385 1.693555 1.607861 27.40407 28.966452 26.811234 3.158403 2.528392 2.212953