Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g00227 TCAAAATATGTGTTAAAACGGCAAGCGGGGGACATTCAGAGGCACGTCTGTCGCTAGTTTCTAGAACCTTCTTTCTTCTCTCCGAGCTCAATCCGCCGTTGATCCCAATTGGTTTAGATCGCATCTTCAACCCTCCCCTACCCGAGGAGAGATCATCCACCTGAAAAGCAATGTGATCGTCGATCTTCTTCTTTTCAAAGCTACTTCGCACCAGAACAAGGAGATTGCATTCATCGTGTTGCGGATTTTGTGTTCGTCTGTTGGATTATCCACTCCCTTTGATGTGAGATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACACAATCTGTGCAAGACCAGGAACATCATGACTTGCATTATATGAGTAATGGGGATGGATTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGGGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGTGGCGATAACTGCGACCAGCTCAGCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCCGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCATGAAGTACCTTTGCGTGTTCCGTCAATCCCAATAACCAATCAACAAAATGATAGGAATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGAAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATTGGCCATAGCAAGTTGGGAACCAAATGAGGGTTGGAGTAATGATGGAAATGGATCCCAACAACAGGAGATTCTTTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCAGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTCCGGGACCTCTCAAAAGCTCCAAATCAAGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCTGAGTCCAACCCAAATGGTGTTTAGAATTGTGACAGATGTTTATGATTCCTGCTGCAGAATTTAGCAAAAATCATACGTATCTCCTACAGAGATTAGTTTGAAACGGGTTAATCGACATTTGACAGATTTAAAATTTCACTGATGGATATGAATATTCACACCCATCGACAGAGAAACCCTTGTTTATCTTCTAAGCTGGCTAATTCATCTTGGAATCAAGGGCACCGTGTACGCGTACTAATTTATTGGCCTCTTGTTTTATCATACTGCGAACCATTTCAAATTATCAATTCCTAGAATCTTGTAAATTATCATTTCCTGCGGGTGTACAATGGACGTTTTTTTTAAAATCCGATTCTATTTTTGTCCTG 1547 43.05 MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGDGLADEHENEGHGIMVGEREVQSDHGDLAENRGVMVDRGGDNCDQLSLSYQGQVYVFDSVSPEKVQAVLLLLGGHEVPLRVPSIPITNQQNDRNLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNEGWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQTATFNRNENAVQNGDSESNPNGV 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4919810 4924670 - XM_039042352.1 Bhi09g00227 42844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g00227 303 CDD ZnF_GATA 231 286 IPR000679 GO:0006355|GO:0043565
Bhi09g00227 303 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Bhi09g00227 303 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355|GO:0043565
Bhi09g00227 303 Gene3D - 221 289 IPR013088 GO:0006355|GO:0008270
Bhi09g00227 303 PANTHER GATA TRANSCRIPTION FACTOR 28 4 290 IPR045280 GO:0006355
Bhi09g00227 303 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Bhi09g00227 303 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355|GO:0043565
Bhi09g00227 303 MobiDBLite consensus disorder prediction 273 303 - -
Bhi09g00227 303 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Bhi09g00227 303 PANTHER GATA TRANSCRIPTION FACTOR 28 4 290 - -
Bhi09g00227 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 289 - -
Bhi09g00227 303 Pfam CCT motif 155 197 IPR010402 GO:0005515
Bhi09g00227 303 SMART GATA_3 225 278 IPR000679 GO:0006355|GO:0043565
Bhi09g00227 303 SMART tify_2 78 113 IPR010399 -
Bhi09g00227 303 Pfam tify domain 84 112 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g00227 - - - cmo:103500623 589.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g00227 Bhi-Chr9:4919810 Bhi09g00229 Bhi-Chr9:4919810 0 dispersed
Bhi09g00226 Bhi-Chr9:4919810 Bhi09g00227 Bhi-Chr9:4919810 0 tandem
Bhi09g00227 Bhi-Chr9:4919810 Bhi09g00228 Bhi-Chr9:4919810 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi12g02239 . 1 180 Tify Gene Family AT4G14713 53.1 2.1e-46 183.3
Bhi12g02238 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02237 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02236 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02235 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1803 PF06203 CCT 8.70E-15 CL0281 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi09g00227 Bhi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0