Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g00250 TGGAGACAGCCTTTTTTTGTGTGGGTTTTGATTCTTCCTGGCTAATCGTGGCTGCCAGCTTCACTTGAGCGTGGCTGTACAGAGTATTAAAAATTAGATAAACGAGTATTTACGAGTTTCACAGAAAGCGAGAGAGGGAGTGAGATTGATTGAGGAAAAGAGGGTGGTTGATTTGAGGCTCTCAATCCTGTTCAGGGCAGAGGGAGGCGAGGTTCGGAAAAGGATGGATTGGAGATGGAGGGAGCTCATCTCTCTCATCATTCTTTGCGTTCTAGGGTGGAAGCCTAGCTGCATTCAAGGAACCACAGATCCAACAGATGCCTCTGCTTTAAGGGTTTTGTACACCAGTTTAAACTCTCCATCTCAGTTAACCCAGTGGAACGCAAATGGTGATGATCCTTGTGGACAATCATGGAAGGGGATTACTTGCTCCGGCTCACGGGTTACGGAAATAAATTTATCTGGCCTTGGACTCAGTGGATCGCTTGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGTAAGGGATGTGAGTAATAACAATCTTGGAGGCGAGATTGTCTACAACCTTCCACCTAACCTGAAAAGACTAAATCTTGGACGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATGACTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGGAACCACTGAATGATGTGTATGGGCAGCTAACTTCCCTATCCACATTGGATTTGTCTTTCAATGCTATGCCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTGGCATCAGCTCTATGTATTTGCAAAACAATCAGTTCACCGGCACAATTGATGTTCTTGCAACTCTTCCTCTTGATAACCTGAATGTTGAAAATAACCGTTTCACTGGATGGATCCCTGAACCACTGAAGAACATCAACCTGCAGAAAAATGGCAACAACTGGAACTCCGGTCCTGCACCCCCTCCTCCACCTGGTACACCCCCAGCCACCAGAAGACCCCGCAATCGCAACTCAGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGATCAGAAATCAGGAATTAGTGGTGGTGCCATTGCAGGAATTATCATTTCTGTGCTCGTTGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAGGAGGAGATCCAAGAGATCATCCACAGATATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTGAAAATGACTGCAGCACAAGAAACAAAGTCGGAAGAGACTTCCTCCACATTTTATCCAACATCATTTGACACTTCTGCTACAATTAATCTCAAACCCCCACCTATTGATCGTCATAAATCATTTGATGAAGACGACTTCTCAAAACGAGCCGCAGTCAAGAAGGCTAGTGCTGCAGCTCCCATTAATGTAAAGTCATATTCAATAGCAGACCTTCAAATGGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGTGTATATCGGGCCGAGTTTGATGACGGGAAGGTTCTTGCAGTGAAAAAAATAAATTCATCTGCACTACCGAGGGAATTATCTGAAGATTTCACTGACATTGTTTCTAAAGTCTCTCAGTTACACCATCCCAATATAACTGAACTCGTGGGTTATTGCTTAGAGCATGGGCAATATTTGCTTGTGTATGAGTTCCACAAAAATGGCTCGCTTTATGACTTCTTACATCTATCAGATGAATACAACAAACCTCTGATATGGAATTCACGTGTTAAGATTGCTTTGGGAACAGCACGTGCGTTAGAGTATCTTCATGAAGCGTGCTCCCCATCAATTGTTCATAGAAACGTCAAGTCTGCTAACATATTGCTGGATGCCGAACTCAGCCCCCACCTTTCTGATTCTGGACTGGAAAGCTTTGTACCAAATGCAGATCAGGCAGTGGATGGGAGTGCAAGTTCAGGATATGCTGCCCCGGAGGTTACCATGTCCGGTCAATATACTGTGAAAAGCGACGTCTACAGTTTTGGAGTAGTCATGTTGGAACTGCTAACTGGACGTAAACCATTCGATAGTTCAAGGCCGAGGTTGGAGCAATCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGATCCCGAACTCAAAGGTCTTTATCCCGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGTGTACAGACGGAACCTGAGTTCAGACCTCCAATGTCAGAGGTGGTGGAAGCGTTGGTCCGTTTGGTGCAACGAGCAAACATGAGTAAGAGAACATATGGAAACGATAATGCAACATCTCCGAGAGGTGAAATGGGTGGGGAGGACACGCCATAAACAACAGAGACACGTTTGTAAGGCCAAAATCTTACCTTCTTCTTGGTAATTCTTTCTTAATATAGAAAGAGGAGGCGGAAACCAGGAATTGCTATCTAATGGCGATAATAATGTTTGTCTGTTAATATTACACGTTTGATGTTTAGGTCTTCATATTCCATAGGTTTTTTTTTAGTATTTTGATAGAAATCAGTAAAATACTCCCTTCATTTTCAACATACATTTATTCTGAAGAAATAATTGGCGGTGATTACTGTATGAACATCTGTTGTATTCTACTTGCTGTTTTTGATTATTAATTTATTATTTATTGTTTGAAA 2690 42.97 MEGDYLLRLTGYGNKFIWPWTQWIAWIPAWKYDIGNQPVRDVSNNNLGGEIVYNLPPNLKRLNLGRNNFNKGIPYSISLMTSLQYLNISHNQLQEPLNDVYGQLTSLSTLDLSFNAMPGNLPQSFSSLSGISSMYLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPEPLKNINLQKNGNNWNSGPAPPPPPGTPPATRRPRNRNSGGSPSNGGSSEDQKSGISGGAIAGIIISVLVVGAVVAFFLVRRRSKRSSTDIEKLDNQPLQPLKMTAAQETKSEETSSTFYPTSFDTSATINLKPPPIDRHKSFDEDDFSKRAAVKKASAAAPINVKSYSIADLQMATGSFNVENLLGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCLEHGQYLLVYEFHKNGSLYDFLHLSDEYNKPLIWNSRVKIALGTARALEYLHEACSPSIVHRNVKSANILLDAELSPHLSDSGLESFVPNADQAVDGSASSGYAAPEVTMSGQYTVKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNATSPRGEMGGEDTP 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5337922 5343673 + XM_039043097.1 Bhi09g00250 42867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g00250 652 MobiDBLite consensus disorder prediction 200 223 - -
Bhi09g00250 652 ProSitePatterns Protein kinases ATP-binding region signature. 354 377 IPR017441 GO:0005524
Bhi09g00250 652 MobiDBLite consensus disorder prediction 177 223 - -
Bhi09g00250 652 ProSiteProfiles Protein kinase domain profile. 348 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi09g00250 652 PANTHER OS01G0253100 PROTEIN 41 645 IPR045271 GO:0004714|GO:0006468
Bhi09g00250 652 Gene3D Phosphorylase Kinase; domain 1 311 425 - -
Bhi09g00250 652 MobiDBLite consensus disorder prediction 632 652 - -
Bhi09g00250 652 CDD STKc_IRAK 354 623 - -
Bhi09g00250 652 Pfam Protein tyrosine and serine/threonine kinase 350 620 IPR001245 GO:0004672|GO:0006468
Bhi09g00250 652 Gene3D Ribonuclease Inhibitor 26 191 IPR032675 -
Bhi09g00250 652 SUPERFAMILY L domain-like 42 173 - -
Bhi09g00250 652 Gene3D Transferase(Phosphotransferase) domain 1 427 642 - -
Bhi09g00250 652 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 41 645 - -
Bhi09g00250 652 MobiDBLite consensus disorder prediction 185 199 - -
Bhi09g00250 652 SUPERFAMILY Protein kinase-like (PK-like) 331 620 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g00250 - - - csv:101213107 1045.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g00250 Bhi-Chr9:5337922 Bhi09g00252 Bhi-Chr9:5337922 0 dispersed
Bhi09g00249 Bhi-Chr9:5337922 Bhi09g00250 Bhi-Chr9:5337922 0 tandem
Bhi09g00250 Bhi-Chr9:5337922 Bhi09g00251 Bhi-Chr9:5337922 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi05g01832 . 34 781 Strubbelig Receptor Gene Family AT4G03390 60.8 1.1e-201 701.0
Bhi03g00471 . 17 750 Strubbelig Receptor Gene Family AT4G03390 51.0 2.2e-159 560.5
Bhi03g00470 . 17 747 Strubbelig Receptor Gene Family AT4G03390 50.8 3.6e-157 553.1
Bhi03g00472 . 1 650 Strubbelig Receptor Gene Family AT4G03390 51.4 4.8e-138 489.6
Bhi09g00253 CCT 393 687 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00252 . 346 640 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00250 . 332 626 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00249 . 332 626 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00251 . 332 626 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi11g02653 . 13 735 Strubbelig Receptor Gene Family AT5G06820 54.3 3.1e-187 652.9
Bhi04g01996 . 22 701 Strubbelig Receptor Gene Family AT1G78980 61.0 3.6e-193 672.5
Bhi01g02817 . 23 719 Strubbelig Receptor Gene Family AT1G78980 51.3 2.4e-152 537.0
Bhi01g02818 CCT 63 577 Strubbelig Receptor Gene Family AT1G78980 50.3 3.1e-128 456.8
Bhi09g00253 CCT 24 690 Strubbelig Receptor Gene Family AT1G78980 50.4 6.1e-124 442.6
Bhi09g00252 . 2 643 Strubbelig Receptor Gene Family AT1G78980 50.2 1.8e-115 414.5
Bhi09g00250 . 41 629 Strubbelig Receptor Gene Family AT1G78980 50.6 7.8e-111 399.1
Bhi09g00249 . 41 629 Strubbelig Receptor Gene Family AT1G78980 50.6 7.8e-111 399.1
Bhi09g00251 . 41 629 Strubbelig Receptor Gene Family AT1G78980 50.6 7.8e-111 399.1
Bhi03g00472 . 354 650 Strubbelig Receptor Gene Family AT1G78980 52.0 5.4e-80 296.6
Bhi04g01996 . 2 679 Strubbelig Receptor Gene Family AT3G13065 52.2 4.3e-146 516.2
Bhi09g00252 . 347 638 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi09g00250 . 333 624 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi09g00249 . 333 624 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi09g00251 . 333 624 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi08g00819 . 306 597 Strubbelig Receptor Gene Family AT3G13065 53.8 9.1e-88 322.4
Bhi08g00818 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 9.4e-85 312.4
Bhi08g00819 . 304 597 Strubbelig Receptor Gene Family AT1G11130 53.4 9.4e-85 312.4
Bhi04g01996 . 392 679 Strubbelig Receptor Gene Family AT1G11130 50.3 7.7e-79 292.7
Bhi11g02653 . 13 735 Strubbelig Receptor Gene Family AT5G06820 54.3 3.1e-187 652.9
Bhi05g01832 . 34 781 Strubbelig Receptor Gene Family AT4G03390 60.8 1.1e-201 701.0
Bhi03g00471 . 17 750 Strubbelig Receptor Gene Family AT4G03390 51.0 2.2e-159 560.5
Bhi03g00470 . 17 747 Strubbelig Receptor Gene Family AT4G03390 50.8 3.6e-157 553.1
Bhi03g00472 . 1 650 Strubbelig Receptor Gene Family AT4G03390 51.4 4.8e-138 489.6
Bhi09g00253 CCT 393 687 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00252 . 346 640 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00250 . 332 626 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00249 . 332 626 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00251 . 332 626 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi04g01996 . 2 679 Strubbelig Receptor Gene Family AT3G13065 52.2 4.3e-146 516.2
Bhi09g00252 . 347 638 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi09g00250 . 333 624 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi09g00249 . 333 624 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi09g00251 . 333 624 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi08g00819 . 306 597 Strubbelig Receptor Gene Family AT3G13065 53.8 9.1e-88 322.4
Bhi04g01996 . 22 701 Strubbelig Receptor Gene Family AT1G78980 61.0 3.6e-193 672.5
Bhi01g02817 . 23 719 Strubbelig Receptor Gene Family AT1G78980 51.3 2.4e-152 537.0
Bhi01g02818 CCT 63 577 Strubbelig Receptor Gene Family AT1G78980 50.3 3.1e-128 456.8
Bhi09g00253 CCT 24 690 Strubbelig Receptor Gene Family AT1G78980 50.4 6.1e-124 442.6
Bhi09g00252 . 2 643 Strubbelig Receptor Gene Family AT1G78980 50.2 1.8e-115 414.5
Bhi09g00250 . 41 629 Strubbelig Receptor Gene Family AT1G78980 50.6 7.8e-111 399.1
Bhi09g00249 . 41 629 Strubbelig Receptor Gene Family AT1G78980 50.6 7.8e-111 399.1
Bhi09g00251 . 41 629 Strubbelig Receptor Gene Family AT1G78980 50.6 7.8e-111 399.1
Bhi03g00472 . 354 650 Strubbelig Receptor Gene Family AT1G78980 52.0 5.4e-80 296.6
Bhi01g02817 . 13 719 Strubbelig Receptor Gene Family AT1G53730 60.6 3.0e-211 732.6
Bhi09g00253 CCT 1 712 Strubbelig Receptor Gene Family AT1G53730 60.0 1.4e-184 644.0
Bhi01g02818 CCT 63 577 Strubbelig Receptor Gene Family AT1G53730 62.3 1.0e-174 611.3
Bhi09g00252 . 2 665 Strubbelig Receptor Gene Family AT1G53730 61.6 3.3e-173 606.3
Bhi09g00250 . 41 651 Strubbelig Receptor Gene Family AT1G53730 65.0 1.4e-171 600.9
Bhi09g00249 . 41 651 Strubbelig Receptor Gene Family AT1G53730 65.0 1.4e-171 600.9
Bhi09g00251 . 41 651 Strubbelig Receptor Gene Family AT1G53730 65.0 1.4e-171 600.9
Bhi04g01996 . 20 687 Strubbelig Receptor Gene Family AT1G53730 51.4 1.5e-154 544.3
Bhi08g00818 . 4 689 Strubbelig Receptor Gene Family AT1G53730 51.4 1.3e-148 524.6
Bhi08g00819 . 2 605 Strubbelig Receptor Gene Family AT1G53730 54.2 8.8e-126 448.7
Bhi01g02817 . 11 714 Strubbelig Receptor Gene Family AT3G14350 51.9 1.5e-183 640.6
Bhi09g00253 CCT 6 702 Strubbelig Receptor Gene Family AT3G14350 55.4 5.8e-167 585.5
Bhi09g00252 . 2 655 Strubbelig Receptor Gene Family AT3G14350 55.9 6.2e-153 538.9
Bhi09g00250 . 41 641 Strubbelig Receptor Gene Family AT3G14350 58.9 1.7e-150 530.8
Bhi09g00249 . 41 641 Strubbelig Receptor Gene Family AT3G14350 58.9 1.7e-150 530.8
Bhi09g00251 . 41 641 Strubbelig Receptor Gene Family AT3G14350 58.9 1.7e-150 530.8
Bhi01g02818 CCT 1 572 Strubbelig Receptor Gene Family AT3G14350 52.2 3.6e-145 513.1
Bhi08g00818 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 1.3e-177 620.5
Bhi08g00819 . 118 627 Strubbelig Receptor Gene Family AT4G22130 68.1 6.5e-177 618.2
Bhi01g02817 . 398 719 Strubbelig Receptor Gene Family AT4G22130 65.7 2.1e-122 437.2
Bhi01g02818 CCT 256 577 Strubbelig Receptor Gene Family AT4G22130 65.7 2.1e-122 437.2
Bhi09g00253 CCT 391 704 Strubbelig Receptor Gene Family AT4G22130 65.5 7.6e-117 418.7
Bhi09g00252 . 344 657 Strubbelig Receptor Gene Family AT4G22130 65.5 7.6e-117 418.7
Bhi09g00250 . 330 643 Strubbelig Receptor Gene Family AT4G22130 65.5 7.6e-117 418.7
Bhi09g00249 . 330 643 Strubbelig Receptor Gene Family AT4G22130 65.5 7.6e-117 418.7
Bhi09g00251 . 330 643 Strubbelig Receptor Gene Family AT4G22130 65.5 7.6e-117 418.7
Bhi05g01832 . 478 773 Strubbelig Receptor Gene Family AT4G22130 62.3 8.4e-108 388.7
Bhi04g01996 . 367 701 Strubbelig Receptor Gene Family AT4G22130 53.9 1.4e-99 361.3
Bhi03g00471 . 464 750 Strubbelig Receptor Gene Family AT4G22130 59.8 1.1e-96 351.7
Bhi03g00470 . 461 747 Strubbelig Receptor Gene Family AT4G22130 59.8 1.1e-96 351.7
Bhi03g00472 . 364 650 Strubbelig Receptor Gene Family AT4G22130 59.8 1.1e-96 351.7
Bhi11g02653 . 387 718 Strubbelig Receptor Gene Family AT4G22130 51.0 1.1e-94 345.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88058 PF07714 PK_Tyr_Ser-Thr 9.90E-44 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi09g00250 Bhi_Chr09 FPKM 2.030454 0.0 0.0 0.56048 0.0 3.561272 3.227743 0.0 0.260742 0.0