Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g00253 GGAGACAGCCTTTTTTTGTGTGGGTTTTGATTCTTCCTGGCTAATCGTGGCTGCCAGCTTCACTTGAGCGTGGCTGTACAGAGTATTAAAAATTAGATAAACGAGTATTTACGAGTTTCACAGAAAGCGAGAGAGGGAGTGAGATTGATTGAGGAAAAGAGGGTGGTTGATTTGAGGCTCTCAATCCTGTTCAGGGCAGAGGGAGGCGAGGTTCGGAAAAGGATGGATTGGAGATGGAGGGAGCTCATCTCTCTCATCATTCTTTGCGTTCTAGGGTGGAAGCCTAGCTGCATTCAAGGAACCACAGATCCAACAGATGCCTCTGCTTTAAGGGTTTTGTACACCAGTTTAAACTCTCCATCTCAGTTAACCCAGTGGAACGCAAATGGTGATGATCCTTGTGGACAATCATGGAAGGGGATTACTTGCTCCGGCTCACGGGTTACGGAAATAAATTTATCTGGCCTTGGACTCAGTGGATCGCTTGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGGATGTGAGTAATAACAATCTTGGAGGCGAGATTGTCTACAACCTTCCACCTAACCTGAAAAGACTAAATCTTGGACGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATGACTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGGAACCACTGAATGATGTGTATGGGCAGCTAACTTCCCTATCCACATTGGATTTGTCTTTCAATGCTATGCCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTGGCATCAGCTCTATGTATTTGCAAAACAATCAGTTCACCGGCACAATTGATGTTCTTGCAACTCTTCCTCTTGATAACCTGAATGTTGAAAATAACCGTTTCACTGGATGGATCCCTGAACCACTGAAGAACATCAACCTGCAGAAAAATGGCAACAACTGGAACTCCGGTCCTGCACCCCCTCCTCCACCTGGTACACCCCCAGCCACCAGAAGACCCCGCAATCGCAACTCAGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGATCAGAAATCAGGAATTAGTGGTGGTGCCATTGCAGGAATTATCATTTCTGTGCTCGTTGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAGGAGGAGATCCAAGAGATCATCCACAGATATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTGAAAATGACTGCAGCACAAGAAACAAAGTCGGAAGAGACTTCCTCCACATTTTATCCAACATCATTTGACACTTCTGCTACAATTAATCTCAAACCCCCACCTATTGATCGTCATAAATCATTTGATGAAGACGACTTCTCAAAACGAGCCGCAGTCAAGAAGGCTAGTGCTGCAGCTCCCATTAATGTAAAGTCATATTCAATAGCAGACCTTCAAATGGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGTGTATATCGGGCCGAGTTTGATGACGGGAAGGTTCTTGCAGTGAAAAAAATAAATTCATCTGCACTACCGAGGGAATTATCTGAAGATTTCACTGACATTGTTTCTAAAGTCTCTCAGTTACACCATCCCAATATAACTGAACTCGTGGGTTATTGCTTAGAGCATGGGCAATATTTGCTTGTGTATGAGTTCCACAAAAATGGCTCGCTTTATGACTTCTTACATCTATCAGATGAATACAACAAACCTCTGATATGGAATTCACGTGTTAAGATTGCTTTGGGAACAGCACGTGCGTTAGAGTATCTTCATGAAGCGTGCTCCCCATCAATTGTTCATAGAAACGTCAAGTCTGCTAACATATTGCTGGATGCCGAACTCAGCCCCCACCTTTCTGATTCTGGACTGGAAAGCTTTGTACCAAATGCAGATCAGGCAGTGGATGGGAGTGCAAGTTCAGGATATGCTGCCCCGGAGGTTACCATGTCCGGTCAATATACTGTGAAAAGCGACGTCTACAGTTTTGGAGTAGTCATGTTGGAACTGCTAACTGGACGTAAACCATTCGATAGTTCAAGGCCGAGGTTGGAGCAATCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGATCCCGAACTCAAAGGTCTTTATCCCGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGTGTACAGACGGAACCTGAGTTCAGACCTCCAATGTCAGAGGTGGTGGAAGCGTTGGTCCGTTTGGTGCAACGAGCAAACATGAGTAAGAGAACATATGGAAACGATAATGCAACATCTCCGAGAGGTGAAATGGGTGGGGAGGACACGCCATAAACAACAGAGACACGTTTGTAAGGCCAAAATCTTACCTTCTTCTTGGTAATTCTTTCTTAATATAGAAAGAGGAGGCGGAAACCAGGAATTGCTATCTAATGGCGATAATAATGTTTGTCTGTTAATATTACACGTTTGATGTTTAGGTCTTCATATTCCATAGGTTTTTTTTTAGTATTTTGATAGAAATCAGTAAAATACTCCCTTCATTTTCAACATACATTTATTCTGAAGAAATAATTGGCGGTGATTACTGTATGAACATCTGTTGTATTCTACTTGCTGTTTTTGATTATTAATTTATTATTTATTGTTTGAAA 2684 43.0 MDWRWRELISLIILCVLGWKPSCIQGTTDPTDASALRVLYTSLNSPSQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLGLSGSLGYQLGSMTSVTNLDVSNNNLGGEIVYNLPPNLKRLNLGRNNFNKGIPYSISLMTSLQYLNISHNQLQEPLNDVYGQLTSLSTLDLSFNAMPGNLPQSFSSLSGISSMYLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPEPLKNINLQKNGNNWNSGPAPPPPPGTPPATRRPRNRNSGGSPSNGGSSEDQKSGISGGAIAGIIISVLVVGAVVAFFLVRRRSKRSSTDIEKLDNQPLQPLKMTAAQETKSEETSSTFYPTSFDTSATINLKPPPIDRHKSFDEDDFSKRAAVKKASAAAPINVKSYSIADLQMATGSFNVENLLGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCLEHGQYLLVYEFHKNGSLYDFLHLSDEYNKPLIWNSRVKIALGTARALEYLHEACSPSIVHRNVKSANILLDAELSPHLSDSGLESFVPNADQAVDGSASSGYAAPEVTMSGQYTVKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNATSPRGEMGGEDTP 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5337923 5343673 + XM_039043095.1 Bhi09g00253 42870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g00253 713 MobiDBLite consensus disorder prediction 330 349 - -
Bhi09g00253 713 Gene3D Phosphorylase Kinase; domain 1 372 486 - -
Bhi09g00253 713 MobiDBLite consensus disorder prediction 238 284 - -
Bhi09g00253 713 PANTHER OS01G0253100 PROTEIN 19 706 IPR045271 GO:0004714|GO:0006468
Bhi09g00253 713 Pfam Leucine Rich repeat 96 114 IPR001611 GO:0005515
Bhi09g00253 713 MobiDBLite consensus disorder prediction 261 284 - -
Bhi09g00253 713 Gene3D Ribonuclease Inhibitor 29 252 IPR032675 -
Bhi09g00253 713 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 19 706 - -
Bhi09g00253 713 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi09g00253 713 CDD STKc_IRAK 415 684 - -
Bhi09g00253 713 SUPERFAMILY L domain-like 28 234 - -
Bhi09g00253 713 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Bhi09g00253 713 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672|GO:0006468
Bhi09g00253 713 MobiDBLite consensus disorder prediction 316 349 - -
Bhi09g00253 713 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Bhi09g00253 713 Gene3D Transferase(Phosphotransferase) domain 1 488 703 - -
Bhi09g00253 713 MobiDBLite consensus disorder prediction 693 713 - -
Bhi09g00253 713 SUPERFAMILY Protein kinase-like (PK-like) 392 681 IPR011009 -
Bhi09g00253 713 MobiDBLite consensus disorder prediction 246 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g00253 - - - csv:101213107 1229.16
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi01g02818 Bhi09g00253 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02817 Bhi-Chr1:69977055 Bhi09g00253 Bhi-Chr9:5337923 0 dispersed
Bhi04g01996 Bhi-Chr4:52012783 Bhi09g00253 Bhi-Chr9:5337923 0 dispersed
Bhi08g00818 Bhi-Chr8:27539852 Bhi09g00253 Bhi-Chr9:5337923 0 dispersed
Bhi09g00251 Bhi-Chr9:5337922 Bhi09g00253 Bhi-Chr9:5337923 0 dispersed
Bhi09g00252 Bhi-Chr9:5337922 Bhi09g00253 Bhi-Chr9:5337923 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g7 Blo05g00016 . . . . . . Bma13g01189 Cmo08g00808 Cmo17g00626 Cma01g00022 . Car01g00018 Car14g01082 . Cpe12g00545 Cpe17g00420 Bhi01g02818 . . . . . . . . . . . . . . Cone17ag0031 . . Lsi02g02850 Csa07g02300 . Cme01g02755 . Blo10g00947 . . . Bpe09g00053 Bma09g01001 . . Cmo01g00024 . Cma08g00837 Cma17g00644 Car08g00721 Car17g00608 Cpe02g01752 . Bhi09g00253 . . . . . . Cla09g00135 . . . . . . . Csa03g02807 Chy01g02121 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi05g01832 . 34 781 Strubbelig Receptor Gene Family AT4G03390 60.8 1.1e-201 701.0
Bhi03g00471 . 17 750 Strubbelig Receptor Gene Family AT4G03390 51.0 2.2e-159 560.5
Bhi03g00470 . 17 747 Strubbelig Receptor Gene Family AT4G03390 50.8 3.6e-157 553.1
Bhi03g00472 . 1 650 Strubbelig Receptor Gene Family AT4G03390 51.4 4.8e-138 489.6
Bhi09g00253 CCT 393 687 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00252 . 346 640 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00250 . 332 626 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00249 . 332 626 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00251 . 332 626 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi11g02653 . 13 735 Strubbelig Receptor Gene Family AT5G06820 54.3 3.1e-187 652.9
Bhi04g01996 . 22 701 Strubbelig Receptor Gene Family AT1G78980 61.0 3.6e-193 672.5
Bhi01g02817 . 23 719 Strubbelig Receptor Gene Family AT1G78980 51.3 2.4e-152 537.0
Bhi01g02818 CCT 63 577 Strubbelig Receptor Gene Family AT1G78980 50.3 3.1e-128 456.8
Bhi09g00253 CCT 24 690 Strubbelig Receptor Gene Family AT1G78980 50.4 6.1e-124 442.6
Bhi09g00252 . 2 643 Strubbelig Receptor Gene Family AT1G78980 50.2 1.8e-115 414.5
Bhi09g00250 . 41 629 Strubbelig Receptor Gene Family AT1G78980 50.6 7.8e-111 399.1
Bhi09g00249 . 41 629 Strubbelig Receptor Gene Family AT1G78980 50.6 7.8e-111 399.1
Bhi09g00251 . 41 629 Strubbelig Receptor Gene Family AT1G78980 50.6 7.8e-111 399.1
Bhi03g00472 . 354 650 Strubbelig Receptor Gene Family AT1G78980 52.0 5.4e-80 296.6
Bhi04g01996 . 2 679 Strubbelig Receptor Gene Family AT3G13065 52.2 4.3e-146 516.2
Bhi09g00252 . 347 638 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi09g00250 . 333 624 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi09g00249 . 333 624 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi09g00251 . 333 624 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi08g00819 . 306 597 Strubbelig Receptor Gene Family AT3G13065 53.8 9.1e-88 322.4
Bhi08g00818 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 9.4e-85 312.4
Bhi08g00819 . 304 597 Strubbelig Receptor Gene Family AT1G11130 53.4 9.4e-85 312.4
Bhi04g01996 . 392 679 Strubbelig Receptor Gene Family AT1G11130 50.3 7.7e-79 292.7
Bhi11g02653 . 13 735 Strubbelig Receptor Gene Family AT5G06820 54.3 3.1e-187 652.9
Bhi05g01832 . 34 781 Strubbelig Receptor Gene Family AT4G03390 60.8 1.1e-201 701.0
Bhi03g00471 . 17 750 Strubbelig Receptor Gene Family AT4G03390 51.0 2.2e-159 560.5
Bhi03g00470 . 17 747 Strubbelig Receptor Gene Family AT4G03390 50.8 3.6e-157 553.1
Bhi03g00472 . 1 650 Strubbelig Receptor Gene Family AT4G03390 51.4 4.8e-138 489.6
Bhi09g00253 CCT 393 687 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00252 . 346 640 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00250 . 332 626 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00249 . 332 626 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi09g00251 . 332 626 Strubbelig Receptor Gene Family AT4G03390 57.7 2.9e-90 330.9
Bhi04g01996 . 2 679 Strubbelig Receptor Gene Family AT3G13065 52.2 4.3e-146 516.2
Bhi09g00252 . 347 638 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi09g00250 . 333 624 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi09g00249 . 333 624 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi09g00251 . 333 624 Strubbelig Receptor Gene Family AT3G13065 59.9 2.5e-98 357.5
Bhi08g00819 . 306 597 Strubbelig Receptor Gene Family AT3G13065 53.8 9.1e-88 322.4
Bhi04g01996 . 22 701 Strubbelig Receptor Gene Family AT1G78980 61.0 3.6e-193 672.5
Bhi01g02817 . 23 719 Strubbelig Receptor Gene Family AT1G78980 51.3 2.4e-152 537.0
Bhi01g02818 CCT 63 577 Strubbelig Receptor Gene Family AT1G78980 50.3 3.1e-128 456.8
Bhi09g00253 CCT 24 690 Strubbelig Receptor Gene Family AT1G78980 50.4 6.1e-124 442.6
Bhi09g00252 . 2 643 Strubbelig Receptor Gene Family AT1G78980 50.2 1.8e-115 414.5
Bhi09g00250 . 41 629 Strubbelig Receptor Gene Family AT1G78980 50.6 7.8e-111 399.1
Bhi09g00249 . 41 629 Strubbelig Receptor Gene Family AT1G78980 50.6 7.8e-111 399.1
Bhi09g00251 . 41 629 Strubbelig Receptor Gene Family AT1G78980 50.6 7.8e-111 399.1
Bhi03g00472 . 354 650 Strubbelig Receptor Gene Family AT1G78980 52.0 5.4e-80 296.6
Bhi01g02817 . 13 719 Strubbelig Receptor Gene Family AT1G53730 60.6 3.0e-211 732.6
Bhi09g00253 CCT 1 712 Strubbelig Receptor Gene Family AT1G53730 60.0 1.4e-184 644.0
Bhi01g02818 CCT 63 577 Strubbelig Receptor Gene Family AT1G53730 62.3 1.0e-174 611.3
Bhi09g00252 . 2 665 Strubbelig Receptor Gene Family AT1G53730 61.6 3.3e-173 606.3
Bhi09g00250 . 41 651 Strubbelig Receptor Gene Family AT1G53730 65.0 1.4e-171 600.9
Bhi09g00249 . 41 651 Strubbelig Receptor Gene Family AT1G53730 65.0 1.4e-171 600.9
Bhi09g00251 . 41 651 Strubbelig Receptor Gene Family AT1G53730 65.0 1.4e-171 600.9
Bhi04g01996 . 20 687 Strubbelig Receptor Gene Family AT1G53730 51.4 1.5e-154 544.3
Bhi08g00818 . 4 689 Strubbelig Receptor Gene Family AT1G53730 51.4 1.3e-148 524.6
Bhi08g00819 . 2 605 Strubbelig Receptor Gene Family AT1G53730 54.2 8.8e-126 448.7
Bhi01g02817 . 11 714 Strubbelig Receptor Gene Family AT3G14350 51.9 1.5e-183 640.6
Bhi09g00253 CCT 6 702 Strubbelig Receptor Gene Family AT3G14350 55.4 5.8e-167 585.5
Bhi09g00252 . 2 655 Strubbelig Receptor Gene Family AT3G14350 55.9 6.2e-153 538.9
Bhi09g00250 . 41 641 Strubbelig Receptor Gene Family AT3G14350 58.9 1.7e-150 530.8
Bhi09g00249 . 41 641 Strubbelig Receptor Gene Family AT3G14350 58.9 1.7e-150 530.8
Bhi09g00251 . 41 641 Strubbelig Receptor Gene Family AT3G14350 58.9 1.7e-150 530.8
Bhi01g02818 CCT 1 572 Strubbelig Receptor Gene Family AT3G14350 52.2 3.6e-145 513.1
Bhi08g00818 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 1.3e-177 620.5
Bhi08g00819 . 118 627 Strubbelig Receptor Gene Family AT4G22130 68.1 6.5e-177 618.2
Bhi01g02817 . 398 719 Strubbelig Receptor Gene Family AT4G22130 65.7 2.1e-122 437.2
Bhi01g02818 CCT 256 577 Strubbelig Receptor Gene Family AT4G22130 65.7 2.1e-122 437.2
Bhi09g00253 CCT 391 704 Strubbelig Receptor Gene Family AT4G22130 65.5 7.6e-117 418.7
Bhi09g00252 . 344 657 Strubbelig Receptor Gene Family AT4G22130 65.5 7.6e-117 418.7
Bhi09g00250 . 330 643 Strubbelig Receptor Gene Family AT4G22130 65.5 7.6e-117 418.7
Bhi09g00249 . 330 643 Strubbelig Receptor Gene Family AT4G22130 65.5 7.6e-117 418.7
Bhi09g00251 . 330 643 Strubbelig Receptor Gene Family AT4G22130 65.5 7.6e-117 418.7
Bhi05g01832 . 478 773 Strubbelig Receptor Gene Family AT4G22130 62.3 8.4e-108 388.7
Bhi04g01996 . 367 701 Strubbelig Receptor Gene Family AT4G22130 53.9 1.4e-99 361.3
Bhi03g00471 . 464 750 Strubbelig Receptor Gene Family AT4G22130 59.8 1.1e-96 351.7
Bhi03g00470 . 461 747 Strubbelig Receptor Gene Family AT4G22130 59.8 1.1e-96 351.7
Bhi03g00472 . 364 650 Strubbelig Receptor Gene Family AT4G22130 59.8 1.1e-96 351.7
Bhi11g02653 . 387 718 Strubbelig Receptor Gene Family AT4G22130 51.0 1.1e-94 345.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88061 PF07714 PK_Tyr_Ser-Thr 1.20E-43 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi09g00253 Bhi_Chr09 FPKM 9.831276 8.53838 2.033828 2.062239 6.135254 4.244016 7.883182 0.987509 1.636128 1.202078