Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g00270 CTTTTCCTTTATTTAAATTAAATTTTTTTTCTTTTTGGGGTTTTGGGAATTAGCTTTCTTACTTTATGAATCAGTTCATCAAAGGGCCTTTAATTAATCCCTGATGTTGGTCGTGTATTTTTCCCTTCGAAATTTCGCGTTTATTTGCAATGTTTGACCTTAACTTGGAAATTCCGGAATTGGATGTATTTATCTGACACCCACTTATCAATAGATGGGAATTATTTTTTAATAATTCTGGTGACTGTGAGTGTTTTGAATTTGTGATTTCCGTGAAATTTATAGAGAGAGAAGTATATAGCTGCCTTTTAGTTTCTAATTATTTTTTGGATTGTAAAATTTTAAAGATATGAATTTAAGGGCGTAAAGGATTCTCCTCCTTGGTGGACTCGAATGTTGATCTTTAAAGCTACGAACTACTTAGGGTTTTCGATTTTCCTAATTTTTTCCATTCGCCGCTCGATCTTTCTTCCTCTAGTCGGTGAGTTCGCCTAATTTCATCTTCTGGGTTGCTTACTTTTCCTTCCTTATTTATTATTATTATTTTTTTTTTTAATTTTTGAGATTTTTCATGTTCTTTCCTCAATTTTGAACTCTTTGAAGGTTGAATTCCGAGGGCTCTTTCGCATTCGGAGCCCATCGGCAGAAGAAGACTGGTGTTGTTTTTTATTTTTTTATTTTTTTGTTTTCTGTAATCCAATCTTCTATTCTTTCAAAACGGCTAAGTTCTCTCTGGGTCTCTATTGAATTGTGTGATCATATTTGTGAAGGAGTTTCATTTTCCTGGTTAGAATTTTTTAAGATATAGCTAATCTAGAGCTAGCATTCCTTCATATCTCTCAAAGTCCATTAAGTTTCAGTCAACTCTTTGAGAGACAGTGGCTTTAAAGTTATGAGTTGATGCTGGAGTCAAGGATTTTAAACTCGCTGGAAGTTTGGTATTTCAACTCTCCTGTAAGAAGCTGGAGAGAATACATTGGTAGAGAGGCTCCGTTGCTCTTATATAACGCCAATGGTTTTTTATTCCCAAGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATCCCCTGCGGGAGTATTCCTGAAGATAAATGTAAGAAGGATAATCCAGAGGATCAGAAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCCAATCCTAGTAAAGATCAGTTTTGTAGGATTATTGAATCATATAAACCAAACATTGTTTACTTACAAGGGGAACAAATCGAGAACGATGAAGTTGGTTCTTTAGTATGGGGAGGTGTTGATTTGTCCACAGTAGAAGCGATAAGTGGGCTCTTTAGTTATCCGTTACCCACCACTGTATATTTGGAAATAGCAAAGGGAGATGAAGTAGCAGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATACTGGAGAAGCACATTCTCTTGTTATGCAGCATGTCATTTCCGTAATGCATTCTTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGACGCATTTCAACTTGCACATGCTTCATTTAGGATGTATTGCTTGAGAAACAACCTTATTCTTCCTAACAGTAGTCATGAAGAAGTTAGTGAAGAGCTGGGTCCACATCTTCTAGGGGAACGCTTGAAAATAAATATCGAACCCCTTGAGGCAGCTGATGATGAAGAAGGTTCACCGGAAATTCCTTCTGTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTTGTATGTGGGGAGCCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTCACGCCCTATTGGACATTGAAATTCGGGGCAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATATATCGACATGCAGTTTTGCCCACATCTCACTATTGGTATCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGACAGAGGCGAACTAGTGCAGACATTAATCGATGGTGAAGGAAGTAAACACTTATCTGAGCCACGAAAATCTGTTTCAATTGCTTGTGGCGCAACAGTTTTTGAAGTTAGCATGAAGATTCCTTCATGGGCATCTCAGATTCTGAGGCAGTTGGCCCCTGATGTTTCTTATCGAAGTTTAGTGGTACTCGGCATTGCTAGTATCCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCTTCCTTTTCTTCTCTTCAAGGAAGGAAAAAGATTTATTTCTGAGCAATTTAACCGATAGCACTCTCCCAATCTGGTTGAAACCACCTGCTCCTAGAAAGAGATCAAAATATATGAAAGATACAAGCCTTGGTTCTCATGATGTTATTGAACATCTGAAGGTTTCGTCTGGTAGGAGAATAGATAGTCCGAACATGAAAATAGGATCAAGGAATGGTTTTAGCACTCCCATGTTTCCATTCACTAGAAAGAGAGGCATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAGATGATCTCTTTTCATGGGATAGCTGAGACAGGTGGCAATGGAAGCCTGATTAAGGCTAGTGTTCCTTGTAATCCCGCAAAACATGTGACTGTAGGTTCAGCTTCAGTTTTGCAACAAAAATTGTTTCCAAGTGCATCTCAATATAAACAAATCATTCCCATGAATCCACTACCTTTGAAGAAGCACGGTTGTGGCAGAAGCCCAATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTGCAGTTTTTATCTCTTCGAGGTCACAATCGACTTATTCCTCCAGGTGGGCTTGCTGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTTGACCTTTACAACCTATACAAGGAGGTGGTTTCAAGAGGCGGCTTTCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTAGAGTATGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTCTTGTGTCACAGTAGTGCAGCGGGGGACTGGGTGAACTGTGGCATTTGTGGGGAGTGGGCTCACTTCGGTTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTTGCAAATGGGTTGTCTCCAGGCTTCTCCTCAAGACCAATGTGAAGTTGATTTGATTTTGAGGTCAAATTGGTCTCTGCCGACCTATAACGATAAGAGAACCAAACCGTTGCGGCCGTACATATAAAGCTCAATTTCCTTAACTACGTGTATTGCTGTGCTATTAACCTAAATCTACAAGTATATATACATATATAATGTATCCAGGAAAACAGAGAAAAGTCAAGCAGAAAACTATTGATTTTTTTTTTTTTTTTTGTATTGTAGGATGGGGTTGAGTAATACTTAGGTAATGCCTTAGGATATAGAAGGGGAATGAATACTACAGTTCTCCAACTTAGTTGAGGGCTAACTTAGATTTTATGTAGAAGATGATGAATTGGACGATCCACTTGAACTTACATGTAAGCTCACCATTTTCCCCCTTTTAACAATCTTGTGTATGCTTACAATGTAAAGGTTTATGCTTCTTAATTA 3778 38.99 MVFYSQVPARYTCRLLAIPCGSIPEDKCKKDNPEDQKRYPFPQLNSSGRLEVQVLSNPSKDQFCRIIESYKPNIVYLQGEQIENDEVGSLVWGGVDLSTVEAISGLFSYPLPTTVYLEIAKGDEVADALHSKGIPYVIYWRSTFSCYAACHFRNAFFSVLQSSSAHTWDAFQLAHASFRMYCLRNNLILPNSSHEEVSEELGPHLLGERLKINIEPLEAADDEEGSPEIPSVSILDNDVEMRFLVCGEPGSLDAYVLGALEDGLHALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIIDRGELVQTLIDGEGSKHLSEPRKSVSIACGATVFEVSMKIPSWASQILRQLAPDVSYRSLVVLGIASIQGLSVASFEKDDAERFLFFSSRKEKDLFLSNLTDSTLPIWLKPPAPRKRSKYMKDTSLGSHDVIEHLKVSSGRRIDSPNMKIGSRNGFSTPMFPFTRKRGMKIAAMRPIPHVNRHKMISFHGIAETGGNGSLIKASVPCNPAKHVTVGSASVLQQKLFPSASQYKQIIPMNPLPLKKHGCGRSPIQACFEEEFLKDLLQFLSLRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVANGLSPGFSSRPM 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5626692 5632890 + XM_039041033.1 Bhi09g00270 42887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g00270 777 Pfam ARID/BRIGHT DNA binding domain 597 693 IPR001606 GO:0003677
Bhi09g00270 777 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 766 - -
Bhi09g00270 777 SUPERFAMILY ARID-like 596 708 IPR036431 GO:0003677
Bhi09g00270 777 Gene3D - 591 696 IPR036431 GO:0003677
Bhi09g00270 777 ProSiteProfiles ARID domain profile. 593 697 IPR001606 GO:0003677
Bhi09g00270 777 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 766 IPR042293 -
Bhi09g00270 777 SUPERFAMILY FYVE/PHD zinc finger 689 757 IPR011011 -
Bhi09g00270 777 SMART ARID_2 590 693 - -
Bhi09g00270 777 SMART bright_3 594 698 IPR001606 GO:0003677
Bhi09g00270 777 CDD PHD_ARID4_like 703 754 - -
Bhi09g00270 777 CDD ARID 596 693 - -
Bhi09g00270 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 760 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g00270 - - - csv:101214243 1451.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02835 Bhi-Chr1:70385863 Bhi09g00270 Bhi-Chr9:5626692 0 dispersed
Bhi09g00270 Bhi-Chr9:5626692 Bhi09g00272 Bhi-Chr9:5626692 0 dispersed
Bhi09g00270 Bhi-Chr9:5626692 Bhi09g00271 Bhi-Chr9:5626692 0 tandem
Bhi01g02834 Bhi-Chr1:70385863 Bhi09g00270 Bhi-Chr9:5626692 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi12g01502 . 103 456 ARID Transcription Factor Family AT1G04880 58.2 6.7e-108 388.7
Bhi11g00337 . 228 497 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00335 . 226 495 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00334 . 197 466 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00336 . 192 461 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi09g02941 . 54 347 ARID Transcription Factor Family AT1G76110 68.2 2.2e-111 399.8
Bhi11g00337 . 207 527 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00335 . 205 525 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00334 . 176 496 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00336 . 171 491 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi01g02835 CCT,ECH 1 773 ARID Transcription Factor Family AT3G43240 59.5 4.1e-267 918.3
Bhi01g02834 . 1 773 ARID Transcription Factor Family AT3G43240 59.5 4.1e-267 918.3
Bhi09g00270 . 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
Bhi09g00271 CCT,ECH 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
Bhi09g00272 . 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1806 PF01388 ARID 2.90E-15 CL0123 Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi09g00270 Bhi_Chr09 FPKM 4.376917 4.646339 9.552505 9.178098 6.775169 6.565464 9.030906 6.499211 5.499381 5.828146