Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g00271 CTTTTCCTTTATTTAAATTAAATTTTTTTTCTTTTTGGGGTTTTGGGAATTAGCTTTCTTACTTTATGAATCAGTTCATCAAAGGGCCTTTAATTAATCCCTGATGTTGGTCGTGTATTTTTCCCTTCGAAATTTCGCGTTTATTTGCAATGTTTGACCTTAACTTGGAAATTCCGGAATTGGATGTATTTATCTGACACCCACTTATCAATAGATGGGAATTATTTTTTAATAATTCTGGTGACTGTGAGTGTTTTGAATTTGTGATTTCCGTGAAATTTATAGAGAGAGAAGTATATAGCTGCCTTTTAGTTTCTAATTATTTTTTGGATTGTAAAATTTTAAAGATATGAATTTAAGGGCGTAAAGGATTCTCCTCCTTGGTGGACTCGAATGTTGATCTTTAAAGCTACGAACTACTTAGGGTTTTCGATTTTCCTAATTTTTTCCATTCGCCGCTCGATCTTTCTTCCTCTAGTCGGTTGAATTCCGAGGGCTCTTTCGCATTCGGAGCCCATCGGCAGAAGAAGACTGGTGTTGTTTTTTATTTTTTTATTTTTTTGTTTTCTGTAATCCAATCTTCTATTCTTTCAAAACGGCTAAGTTCTCTCTGGGTCTCTATTGAATTGTGTGATCATATTTGTGAAGGAGTTTCATTTTCCTGGTTAGAATTTTTTAAGATATAGCTAATCTAGAGCTAGCATTCCTTCATATCTCTCAAAGTCCATTAAGTTTCAGTCAACTCTTTGAGAGACAGTGGCTTTAAAGTTATGAGTTGATGCTGGAGTCAAGGATTTTAAACTCGCTGGAAGTTTGGTATTTCAACTCTCCTGTAAGAAGCTGGAGAGAATACATTGGTAGAGAGGCTCCGTTGCTCTTATATAACGCCAATGGTTTTTTATTCCCAAGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATCCCCTGCGGGAGTATTCCTGAAGATAAATGTAAGAAGGATAATCCAGAGGATCAGAAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCCAATCCTAGTAAAGATCAGTTTTGTAGGATTATTGAATCATATAAACCAAACATTGTTTACTTACAAGGGGAACAAATCGAGAACGATGAAGTTGGTTCTTTAGTATGGGGAGGTGTTGATTTGTCCACAGTAGAAGCGATAAGTGGGCTCTTTAGTTATCCGTTACCCACCACTGTATATTTGGAAATAGCAAAGGGAGATGAAGTAGCAGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATACTGGAGAAGCACATTCTCTTGTTATGCAGCATGTCATTTCCGTAATGCATTCTTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGACGCATTTCAACTTGCACATGCTTCATTTAGGATGTATTGCTTGAGAAACAACCTTATTCTTCCTAACAGTAGTCATGAAGAAGTTAGTGAAGAGCTGGGTCCACATCTTCTAGGGGAACGCTTGAAAATAAATATCGAACCCCTTGAGGCAGCTGATGATGAAGAAGGTTCACCGGAAATTCCTTCTGTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTTGTATGTGGGGAGCCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTCACGCCCTATTGGACATTGAAATTCGGGGCAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATATATCGACATGCAGTTTTGCCCACATCTCACTATTGGTATCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGACAGAGGCGAACTAGTGCAGACATTAATCGATGGTGAAGGAAGTAAACACTTATCTGAGCCACGAAAATCTGTTTCAATTGCTTGTGGCGCAACAGTTTTTGAAGTTAGCATGAAGATTCCTTCATGGGCATCTCAGATTCTGAGGCAGTTGGCCCCTGATGTTTCTTATCGAAGTTTAGTGGTACTCGGCATTGCTAGTATCCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCTTCCTTTTCTTCTCTTCAAGGAAGGAAAAAGATTTATTTCTGAGCAATTTAACCGATAGCACTCTCCCAATCTGGTTGAAACCACCTGCTCCTAGAAAGAGATCAAAATATATGAAAGATACAAGCCTTGGTTCTCATGATGTTATTGAACATCTGAAGGTTTCGTCTGGTAGGAGAATAGATAGTCCGAACATGAAAATAGGATCAAGGAATGGTTTTAGCACTCCCATGTTTCCATTCACTAGAAAGAGAGGCATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAGATGATCTCTTTTCATGGGATAGCTGAGACAGGTGGCAATGGAAGCCTGATTAAGGCTAGTGTTCCTTGTAATCCCGCAAAACATGTGACTGTAGGTTCAGCTTCAGTTTTGCAACAAAAATTGTTTCCAAGTGCATCTCAATATAAACAAATCATTCCCATGAATCCACTACCTTTGAAGAAGCACGGTTGTGGCAGAAGCCCAATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTGCAGTTTTTATCTCTTCGAGGTCACAATCGACTTATTCCTCCAGGTGGGCTTGCTGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTTGACCTTTACAACCTATACAAGGAGGTGGTTTCAAGAGGCGGCTTTCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTAGAGTATGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTCTTGTGTCACAGTAGTGCAGCGGGGGACTGGGTGAACTGTGGCATTTGTGGGGAGTGGGCTCACTTCGGTTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTTGCAAATGGGTTGTCTCCAGGCTTCTCCTCAAGACCAATGTGAAGTTGATTTGATTTTGAGGTCAAATTGGTCTCTGCCGACCTATAACGATAAGAGAACCAAACCGTTGCGGCCGTACATATAAAGCTCAATTTCCTTAACTACGTGTATTGCTGTGCTATTAACCTAAATCTACAAGTATATATACATATATAATGTATCCAGGAAAACAGAGAAAAGTCAAGCAGAAAACTATTGATTTTTTTTTTTTTTTTTGTATTGTAGGATGGGGTTGAGTAATACTTAGGTAATGCCTTAGGATATAGAAGGGGAATGAATACTACAGTTCTCCAACTTAGTTGAGGGCTAACTTAGATTTTATGTAGAAGATGATGAATTGGACGATCCACTTGAACTTACATGTAAGCTCACCATTTTCCCCCTTTTAACAATCTTGTGTATGCTTACAATGTAAAGGTTTATGCTTCTTAATTA 3656 39.39 MVFYSQVPARYTCRLLAIPCGSIPEDKCKKDNPEDQKRYPFPQLNSSGRLEVQVLSNPSKDQFCRIIESYKPNIVYLQGEQIENDEVGSLVWGGVDLSTVEAISGLFSYPLPTTVYLEIAKGDEVADALHSKGIPYVIYWRSTFSCYAACHFRNAFFSVLQSSSAHTWDAFQLAHASFRMYCLRNNLILPNSSHEEVSEELGPHLLGERLKINIEPLEAADDEEGSPEIPSVSILDNDVEMRFLVCGEPGSLDAYVLGALEDGLHALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIIDRGELVQTLIDGEGSKHLSEPRKSVSIACGATVFEVSMKIPSWASQILRQLAPDVSYRSLVVLGIASIQGLSVASFEKDDAERFLFFSSRKEKDLFLSNLTDSTLPIWLKPPAPRKRSKYMKDTSLGSHDVIEHLKVSSGRRIDSPNMKIGSRNGFSTPMFPFTRKRGMKIAAMRPIPHVNRHKMISFHGIAETGGNGSLIKASVPCNPAKHVTVGSASVLQQKLFPSASQYKQIIPMNPLPLKKHGCGRSPIQACFEEEFLKDLLQFLSLRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVANGLSPGFSSRPM 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5626692 5632890 + XM_039041034.1 Bhi09g00271 42888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g00271 777 Pfam ARID/BRIGHT DNA binding domain 597 693 IPR001606 GO:0003677
Bhi09g00271 777 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 766 - -
Bhi09g00271 777 SUPERFAMILY ARID-like 596 708 IPR036431 GO:0003677
Bhi09g00271 777 Gene3D - 591 696 IPR036431 GO:0003677
Bhi09g00271 777 ProSiteProfiles ARID domain profile. 593 697 IPR001606 GO:0003677
Bhi09g00271 777 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 766 IPR042293 -
Bhi09g00271 777 SUPERFAMILY FYVE/PHD zinc finger 689 757 IPR011011 -
Bhi09g00271 777 SMART ARID_2 590 693 - -
Bhi09g00271 777 SMART bright_3 594 698 IPR001606 GO:0003677
Bhi09g00271 777 CDD PHD_ARID4_like 703 754 - -
Bhi09g00271 777 CDD ARID 596 693 - -
Bhi09g00271 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 760 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g00271 - - - csv:101214243 1451.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi01g02835 Bhi09g00271 CCT
Bhi01g02835 Bhi09g00271 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02834 Bhi-Chr1:70385863 Bhi09g00271 Bhi-Chr9:5626692 0 dispersed
Bhi09g00270 Bhi-Chr9:5626692 Bhi09g00271 Bhi-Chr9:5626692 0 tandem
Bhi09g00271 Bhi-Chr9:5626692 Bhi09g00272 Bhi-Chr9:5626692 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi12g01502 . 103 456 ARID Transcription Factor Family AT1G04880 58.2 6.7e-108 388.7
Bhi11g00337 . 228 497 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00335 . 226 495 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00334 . 197 466 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00336 . 192 461 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi09g02941 . 54 347 ARID Transcription Factor Family AT1G76110 68.2 2.2e-111 399.8
Bhi11g00337 . 207 527 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00335 . 205 525 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00334 . 176 496 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00336 . 171 491 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi01g02835 CCT,ECH 1 773 ARID Transcription Factor Family AT3G43240 59.5 4.1e-267 918.3
Bhi01g02834 . 1 773 ARID Transcription Factor Family AT3G43240 59.5 4.1e-267 918.3
Bhi09g00270 . 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
Bhi09g00271 CCT,ECH 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
Bhi09g00272 . 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1807 PF01388 ARID 2.90E-15 CL0123 Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi09g00271 Bhi_Chr09 FPKM 4.535525 5.827214 49.275013 48.011284 1.33315 1.327286 1.284153 7.470751 7.38752 7.321061