Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g00272 CTTTTCCTTTATTTAAATTAAATTTTTTTTCTTTTTGGGGTTTTGGGAATTAGCTTTCTTACTTTATGAATCAGTTCATCAAAGGGCCTTTAATTAATCCCTGATGTTGGTCGTGTATTTTTCCCTTCGAAATTTCGCGTTTATTTGCAATGTTTGACCTTAACTTGGAAATTCCGGAATTGGATGTATTTATCTGACACCCACTTATCAATAGATGGGAATTATTTTTTAATAATTCTGGTGACTGTGAGTGTTTTGAATTTGTGATTTCCGTGAAATTTATAGAGAGAGAAGTATATAGCTGCCTTTTAGTTTCTAATTATTTTTTGGATTGTAAAATTTTAAAGATATGAATTTAAGGGCGTAAAGGATTCTCCTCCTTGGTGGACTCGAATGTTGATCTTTAAAGCTACGAACTACTTAGGGTTTTCGATTTTCCTAATTTTTTCCATTCGCCGCTCGATCTTTCTTCCTCTAGTCGTGGCTTTAAAGTTATGAGTTGATGCTGGAGTCAAGGATTTTAAACTCGCTGGAAGTTTGGTATTTCAACTCTCCTGTAAGAAGCTGGAGAGAATACATTGGTAGAGAGGCTCCGTTGCTCTTATATAACGCCAATGGTTTTTTATTCCCAAGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATCCCCTGCGGGAGTATTCCTGAAGATAAATGTAAGAAGGATAATCCAGAGGATCAGAAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCCAATCCTAGTAAAGATCAGTTTTGTAGGATTATTGAATCATATAAACCAAACATTGTTTACTTACAAGGGGAACAAATCGAGAACGATGAAGTTGGTTCTTTAGTATGGGGAGGTGTTGATTTGTCCACAGTAGAAGCGATAAGTGGGCTCTTTAGTTATCCGTTACCCACCACTGTATATTTGGAAATAGCAAAGGGAGATGAAGTAGCAGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATACTGGAGAAGCACATTCTCTTGTTATGCAGCATGTCATTTCCGTAATGCATTCTTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGACGCATTTCAACTTGCACATGCTTCATTTAGGATGTATTGCTTGAGAAACAACCTTATTCTTCCTAACAGTAGTCATGAAGAAGTTAGTGAAGAGCTGGGTCCACATCTTCTAGGGGAACGCTTGAAAATAAATATCGAACCCCTTGAGGCAGCTGATGATGAAGAAGGTTCACCGGAAATTCCTTCTGTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTTGTATGTGGGGAGCCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTCACGCCCTATTGGACATTGAAATTCGGGGCAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATATATCGACATGCAGTTTTGCCCACATCTCACTATTGGTATCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGACAGAGGCGAACTAGTGCAGACATTAATCGATGGTGAAGGAAGTAAACACTTATCTGAGCCACGAAAATCTGTTTCAATTGCTTGTGGCGCAACAGTTTTTGAAGTTAGCATGAAGATTCCTTCATGGGCATCTCAGATTCTGAGGCAGTTGGCCCCTGATGTTTCTTATCGAAGTTTAGTGGTACTCGGCATTGCTAGTATCCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCTTCCTTTTCTTCTCTTCAAGGAAGGAAAAAGATTTATTTCTGAGCAATTTAACCGATAGCACTCTCCCAATCTGGTTGAAACCACCTGCTCCTAGAAAGAGATCAAAATATATGAAAGATACAAGCCTTGGTTCTCATGATGTTATTGAACATCTGAAGGTTTCGTCTGGTAGGAGAATAGATAGTCCGAACATGAAAATAGGATCAAGGAATGGTTTTAGCACTCCCATGTTTCCATTCACTAGAAAGAGAGGCATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAGATGATCTCTTTTCATGGGATAGCTGAGACAGGTGGCAATGGAAGCCTGATTAAGGCTAGTGTTCCTTGTAATCCCGCAAAACATGTGACTGTAGGTTCAGCTTCAGTTTTGCAACAAAAATTGTTTCCAAGTGCATCTCAATATAAACAAATCATTCCCATGAATCCACTACCTTTGAAGAAGCACGGTTGTGGCAGAAGCCCAATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTGCAGTTTTTATCTCTTCGAGGTCACAATCGACTTATTCCTCCAGGTGGGCTTGCTGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTTGACCTTTACAACCTATACAAGGAGGTGGTTTCAAGAGGCGGCTTTCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTAGAGTATGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTCTTGTGTCACAGTAGTGCAGCGGGGGACTGGGTGAACTGTGGCATTTGTGGGGAGTGGGCTCACTTCGGTTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTTGCAAATGGGTTGTCTCCAGGCTTCTCCTCAAGACCAATGTGAAGTTGATTTGATTTTGAGGTCAAATTGGTCTCTGCCGACCTATAACGATAAGAGAACCAAACCGTTGCGGCCGTACATATAAAGCTCAATTTCCTTAACTACGTGTATTGCTGTGCTATTAACCTAAATCTACAAGTATATATACATATATAATGTATCCAGGAAAACAGAGAAAAGTCAAGCAGAAAACTATTGATTTTTTTTTTTTTTTTTGTATTGTAGGATGGGGTTGAGTAATACTTAGGTAATGCCTTAGGATATAGAAGGGGAATGAATACTACAGTTCTCCAACTTAGTTGAGGGCTAACTTAGATTTTATGTAGAAGATGATGAATTGGACGATCCACTTGAACTTACATGTAAGCTCACCATTTTCCCCCTTTTAACAATCTTGTGTATGCTTACAATGTAAAGGTTTATGCTTCTTAATTA 3380 39.67 MVFYSQVPARYTCRLLAIPCGSIPEDKCKKDNPEDQKRYPFPQLNSSGRLEVQVLSNPSKDQFCRIIESYKPNIVYLQGEQIENDEVGSLVWGGVDLSTVEAISGLFSYPLPTTVYLEIAKGDEVADALHSKGIPYVIYWRSTFSCYAACHFRNAFFSVLQSSSAHTWDAFQLAHASFRMYCLRNNLILPNSSHEEVSEELGPHLLGERLKINIEPLEAADDEEGSPEIPSVSILDNDVEMRFLVCGEPGSLDAYVLGALEDGLHALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIIDRGELVQTLIDGEGSKHLSEPRKSVSIACGATVFEVSMKIPSWASQILRQLAPDVSYRSLVVLGIASIQGLSVASFEKDDAERFLFFSSRKEKDLFLSNLTDSTLPIWLKPPAPRKRSKYMKDTSLGSHDVIEHLKVSSGRRIDSPNMKIGSRNGFSTPMFPFTRKRGMKIAAMRPIPHVNRHKMISFHGIAETGGNGSLIKASVPCNPAKHVTVGSASVLQQKLFPSASQYKQIIPMNPLPLKKHGCGRSPIQACFEEEFLKDLLQFLSLRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVANGLSPGFSSRPM 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5626692 5632890 + XM_039041035.1 Bhi09g00272 42889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g00272 777 Pfam ARID/BRIGHT DNA binding domain 597 693 IPR001606 GO:0003677
Bhi09g00272 777 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 766 - -
Bhi09g00272 777 SUPERFAMILY ARID-like 596 708 IPR036431 GO:0003677
Bhi09g00272 777 Gene3D - 591 696 IPR036431 GO:0003677
Bhi09g00272 777 ProSiteProfiles ARID domain profile. 593 697 IPR001606 GO:0003677
Bhi09g00272 777 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 766 IPR042293 -
Bhi09g00272 777 SUPERFAMILY FYVE/PHD zinc finger 689 757 IPR011011 -
Bhi09g00272 777 SMART ARID_2 590 693 - -
Bhi09g00272 777 SMART bright_3 594 698 IPR001606 GO:0003677
Bhi09g00272 777 CDD PHD_ARID4_like 703 754 - -
Bhi09g00272 777 CDD ARID 596 693 - -
Bhi09g00272 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 760 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g00270 Bhi-Chr9:5626692 Bhi09g00272 Bhi-Chr9:5626692 0 dispersed
Bhi09g00271 Bhi-Chr9:5626692 Bhi09g00272 Bhi-Chr9:5626692 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1808 PF01388 ARID 2.90E-15 CL0123 Bhi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g00272 - - csv:101214243 1451.8