Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g00348 AGTATTATTTTGGTAAAAGGCAATTGGATCCAATGAAGGAAAGATATGGAGAGATCTCAATAATCCGACTTTGCCCTTCAACAAATTCAAATTTCTCTGTTCACGATCCATAACCATAAATATATATTCCTTTCGCAAATTGAGCTTTTGGATTTTGGATTTTGGATTTTGGATTCTCTCTCTCTCTCTCTCTCTGTGTGTTTTGGTAATCTGCAGTTTTTTCTTTTCCCTTATTCGACTCTATTTCGTCTCCAGAAGGACGAGCAGGAAGAAAATGGCCATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTGGAAGATGTTTTCAGTGATTTTAGGGGACGAAGAAACGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGGTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAACTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAACAGATAGGAGGCGGCTTTTCAATATGATAAATGATTTGCCAACTGTATTCGAAGTAGTCACAGGTATTGCAAAGAAACAAGTTAAGGAGAAGTCATCAAGTGCTAAATCCAAGTCGAGCTTTAAAACGAGGGAAGCTGAAATGCAAGGAATGTACGCAAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGACGAAGATGAGCACGGTGACACTTTGTGTGGGGCATGTGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGAAAGTGTGTTAGAATAACTCCAGCAAAAGCCGAGCACATTAAGCAATACAAATGCCCATCCTGCAGCAACAAGAGAAGCCGCATTTGAATGACATCGACATCGACGCACATCTCGGCGCCAAGCCTCGGTAACATGCCGTCCATCCACCTTCCCTCACCAAATTCCTCAATGTCTGTCCTATAGTTGGCCCTCTTCTCCCATTTTCATCCCCATCCAAAACCTGCAATC 1168 42.81 MAMDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSAKSKSSFKTREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7201780 7206329 + XM_039042030.1 Bhi09g00348 42965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g00348 250 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 8 249 - -
Bhi09g00348 250 PANTHER CPG BINDING PROTEIN 8 249 IPR045104 GO:0006355|GO:0042393
Bhi09g00348 250 SMART PHD_3 196 244 IPR001965 -
Bhi09g00348 250 Pfam Alfin 13 141 IPR021998 GO:0006355|GO:0042393
Bhi09g00348 250 CDD PHD_AL_plant 196 246 IPR044104 -
Bhi09g00348 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Bhi09g00348 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 245 IPR013083 -
Bhi09g00348 250 Pfam PHD-finger 197 246 IPR019787 -
Bhi09g00348 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Bhi09g00348 250 SUPERFAMILY FYVE/PHD zinc finger 186 248 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01503 Bhi-Chr4:37051316 Bhi09g00348 Bhi-Chr9:7201780 1.40E-128 dispersed
Bhi04g01504 Bhi-Chr4:37051316 Bhi09g00348 Bhi-Chr9:7201780 1.32E-130 dispersed
Bhi09g00348 Bhi-Chr9:7201780 Bhi06g01606 Bhi-Chr6:46454071 5.21E-117 dispersed
Bhi11g00925 Bhi-Chr11:28642454 Bhi09g00348 Bhi-Chr9:7201780 3.61E-112 dispersed
Bhi11g01831 Bhi-Chr11:52481651 Bhi09g00348 Bhi-Chr9:7201780 9.43E-93 dispersed
Bhi09g00348 Bhi-Chr9:7201780 Bhi09g00349 Bhi-Chr9:7201781 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1817 PF12165 Alfin 7.50E-68 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g00348 - - bhj:120085821 493.426