Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g00548 TTGACCATAAAATACCTTCTCCATTTTTACATTTTCTTAACTCTTCCCCTGTTTTTGTCTCAAAACTTCAACAATCAAAACGATGATTGGCGACAAGAAAGCGATTATACCTCGCCAATCTTCCTACAACTCTCTGTATTTGAATCCCCTCATTGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGCGGATTCCGGCAAGGTAAAGAGAACTTGATACCTAATACGAAGGATAAACAGAGAGATGAAAATGCAGAGTGTTGCGACAAAGAAAATGCGATTCCCATTAATGAGTTCTGTGCTAATTCGAAGCAGAAATTTGGGGATTTTAAGTCATTTTCGACTGGAAAGGCTTTGAAGCCTTCTTCACTTCATCTCTGTATGCAAATGAACGAGCCCGATAAGGTTTTTGCCTCTAGATTGTGGGATGCCACTGATTCTGAACATTCAAGTTCATTGAAGATTTGGGATTTTTCGGATTCGGAAGCTGCCCCAGCTTCCTCATGGTCCACTTTGCCAAACAGGTCATTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTTCATGGTGGAGCCTTCTATTCTCTATACACAAATGAAGGGAAAGGACGGCAGGACCGGAAGTTGGCAGTGGCCCGTCATCGACGACGGAACGGGAGGTCAGAGTATAAAATAGCTCAGAGTACAAGGGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCAAAATATCATATATGGGATCAGGGGAGCCGTCTGAAACCGATCCCGAGCAAGCCGAGATCGCTTCTGGCTGCTGTAACATTCATGCCTACAATAACCACTTGGACAGGCAGCCATAGAAGCATGAAAGCTTTCATCCCCAAGCATCAATCAATGCAGCTGAAAAACACCAATCAGCAGGTGCAGCACATAGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGGCCAAAGTTCACCAGCTTGTTTCTAAGGTTCCCCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTTAGAGACAGAGGAAGGGCGGTTTCAGGTCTTATGATCCAAACCTCTGTGAAAAATTTTCAGTTGACTTTAGAGGAAAACGGCAAACAAACGATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGTCTGGCTTCCATAGATTCAAAGCTGTGTTGCTCAGTATGATCATATATGGTTGCTTTTCAGCTCTCTTTTGCAGTTCAATCTCTGAACTATCTTCCTTTCAATGTTCTGACTTAGCATAGATTGATGCAAGACTAGTTGATGAGATGTGTTTGTAAATTCTCTCGAGTCTTGAATTTTGATGATTAACAATGTTTAGCTTTGATCA 1472 42.87 MIGDKKAIIPRQSSYNSLYLNPLIDLRHNRSCSDGGGFRQGKENLIPNTKDKQRDENAECCDKENAIPINEFCANSKQKFGDFKSFSTGKALKPSSLHLCMQMNEPDKVFASRLWDATDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSTRGILCNADDSFVGSMTTNLVGSKYHIWDQGSRLKPIPSKPRSLLAAVTFMPTITTWTGSHRSMKAFIPKHQSMQLKNTNQQVQHIAGLPREWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11597798 11601418 + XM_039043492.1 Bhi09g00548 43165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g00548 407 PANTHER TUBBY-RELATED 1 405 - -
Bhi09g00548 407 PRINTS Tubby superfamily signature 227 251 IPR000007 -
Bhi09g00548 407 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Bhi09g00548 407 PRINTS Tubby superfamily signature 363 382 IPR000007 -
Bhi09g00548 407 PRINTS Tubby superfamily signature 384 406 IPR000007 -
Bhi09g00548 407 Gene3D Tubby Protein; Chain A 147 400 IPR025659 -
Bhi09g00548 407 MobiDBLite consensus disorder prediction 35 55 - -
Bhi09g00548 407 SUPERFAMILY Tubby C-terminal domain-like 139 405 IPR025659 -
Bhi09g00548 407 Pfam Tub family 152 401 IPR000007 -
Bhi09g00548 407 PANTHER TUBBY-LIKE PROTEIN 8 1 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g00548 Bhi-Chr9:11597798 Bhi01g00948 Bhi-Chr1:17406519 5.15E-15 dispersed
Bhi09g00548 Bhi-Chr9:11597798 Bhi09g00549 Bhi-Chr9:11597798 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1829 PF01167 Tub 1.20E-45 CL0395 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g00548 K19600 - csv:101216780 779.245