Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g00548 TTGACCATAAAATACCTTCTCCATTTTTACATTTTCTTAACTCTTCCCCTGTTTTTGTCTCAAAACTTCAACAATCAAAACGATGATTGGCGACAAGAAAGCGATTATACCTCGCCAATCTTCCTACAACTCTCTGTATTTGAATCCCCTCATTGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGCGGATTCCGGCAAGGTAAAGAGAACTTGATACCTAATACGAAGGATAAACAGAGAGATGAAAATGCAGAGTGTTGCGACAAAGAAAATGCGATTCCCATTAATGAGTTCTGTGCTAATTCGAAGCAGAAATTTGGGGATTTTAAGTCATTTTCGACTGGAAAGGCTTTGAAGCCTTCTTCACTTCATCTCTGTATGCAAATGAACGAGCCCGATAAGGTTTTTGCCTCTAGATTGTGGGATGCCACTGATTCTGAACATTCAAGTTCATTGAAGATTTGGGATTTTTCGGATTCGGAAGCTGCCCCAGCTTCCTCATGGTCCACTTTGCCAAACAGGTCATTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTTCATGGTGGAGCCTTCTATTCTCTATACACAAATGAAGGGAAAGGACGGCAGGACCGGAAGTTGGCAGTGGCCCGTCATCGACGACGGAACGGGAGGTCAGAGTATAAAATAGCTCAGAGTACAAGGGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCAAAATATCATATATGGGATCAGGGGAGCCGTCTGAAACCGATCCCGAGCAAGCCGAGATCGCTTCTGGCTGCTGTAACATTCATGCCTACAATAACCACTTGGACAGGCAGCCATAGAAGCATGAAAGCTTTCATCCCCAAGCATCAATCAATGCAGCTGAAAAACACCAATCAGCAGGTGCAGCACATAGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGGCCAAAGTTCACCAGCTTGTTTCTAAGGTTCCCCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTTAGAGACAGAGGAAGGGCGGTTTCAGGTCTTATGATCCAAACCTCTGTGAAAAATTTTCAGTTGACTTTAGAGGAAAACGGCAAACAAACGATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGTCTGGCTTCCATAGATTCAAAGCTGTGTTGCTCAGTATGATCATATATGGTTGCTTTTCAGCTCTCTTTTGCAGTTCAATCTCTGAACTATCTTCCTTTCAATGTTCTGACTTAGCATAGATTGATGCAAGACTAGTTGATGAGATGTGTTTGTAAATTCTCTCGAGTCTTGAATTTTGATGATTAACAATGTTTAGCTTTGATCA 1472 42.87 MIGDKKAIIPRQSSYNSLYLNPLIDLRHNRSCSDGGGFRQGKENLIPNTKDKQRDENAECCDKENAIPINEFCANSKQKFGDFKSFSTGKALKPSSLHLCMQMNEPDKVFASRLWDATDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSTRGILCNADDSFVGSMTTNLVGSKYHIWDQGSRLKPIPSKPRSLLAAVTFMPTITTWTGSHRSMKAFIPKHQSMQLKNTNQQVQHIAGLPREWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 407
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 11597798 11601418 + XM_039043492.1 Bhi09g00548 43165

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g00548 407 PANTHER TUBBY-RELATED 1 405 - -
Bhi09g00548 407 PRINTS Tubby superfamily signature 227 251 IPR000007 -
Bhi09g00548 407 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Bhi09g00548 407 PRINTS Tubby superfamily signature 363 382 IPR000007 -
Bhi09g00548 407 PRINTS Tubby superfamily signature 384 406 IPR000007 -
Bhi09g00548 407 Gene3D Tubby Protein; Chain A 147 400 IPR025659 -
Bhi09g00548 407 MobiDBLite consensus disorder prediction 35 55 - -
Bhi09g00548 407 SUPERFAMILY Tubby C-terminal domain-like 139 405 IPR025659 -
Bhi09g00548 407 Pfam Tub family 152 401 IPR000007 -
Bhi09g00548 407 PANTHER TUBBY-LIKE PROTEIN 8 1 405 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g00548 K19600 TUB, TULP; tubby and related proteins - csv:101216780 779.245
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g00548 Bhi-Chr9:11597798 Bhi01g00948 Bhi-Chr1:17406519 5.15E-15 dispersed
Bhi09g00548 Bhi-Chr9:11597798 Bhi09g00549 Bhi-Chr9:11597798 0 tandem
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g02131 . 1 430 TUB Transcription Factor Family AT1G76900 73.6 6.7e-180 627.9
Bhi01g01650 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 4.1e-169 592.0
Bhi01g01648 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 4.1e-169 592.0
Bhi01g01649 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 4.1e-169 592.0
Bhi04g01773 . 1 432 TUB Transcription Factor Family AT1G76900 69.1 4.5e-168 588.6
Bhi04g01774 . 1 432 TUB Transcription Factor Family AT1G76900 69.1 4.5e-168 588.6
Bhi01g02370 . 1 413 TUB Transcription Factor Family AT1G76900 50.4 9.8e-115 411.4
Bhi01g02371 . 1 413 TUB Transcription Factor Family AT1G76900 50.4 9.8e-115 411.4
Bhi12g01742 CCT,ECH 13 386 TUB Transcription Factor Family AT1G76900 50.5 1.3e-114 411.0
Bhi01g00948 CCT,ECH 13 387 TUB Transcription Factor Family AT1G76900 51.2 1.3e-111 401.0
Bhi03g01311 . 50 414 TUB Transcription Factor Family AT1G76900 52.5 8.3e-106 381.7
Bhi03g01310 . 50 414 TUB Transcription Factor Family AT1G76900 52.5 8.3e-106 381.7
Bhi03g01308 . 50 414 TUB Transcription Factor Family AT1G76900 52.5 8.3e-106 381.7
Bhi03g01309 . 50 414 TUB Transcription Factor Family AT1G76900 52.5 8.3e-106 381.7
Bhi03g01307 . 50 414 TUB Transcription Factor Family AT1G76900 52.5 8.3e-106 381.7
Bhi03g01306 . 50 414 TUB Transcription Factor Family AT1G76900 52.5 8.3e-106 381.7
Bhi03g01305 . 50 414 TUB Transcription Factor Family AT1G76900 52.5 8.3e-106 381.7
Bhi03g01312 . 24 287 TUB Transcription Factor Family AT1G76900 50.7 8.2e-69 258.8
Bhi01g01650 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 1.2e-101 367.1
Bhi01g01648 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 1.2e-101 367.1
Bhi01g01649 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 1.2e-101 367.1
Bhi04g02131 . 173 430 TUB Transcription Factor Family AT1G25280 69.0 1.9e-94 343.2
Bhi04g01773 . 175 432 TUB Transcription Factor Family AT1G25280 70.8 1.6e-93 340.1
Bhi04g01774 . 175 432 TUB Transcription Factor Family AT1G25280 70.8 1.6e-93 340.1
Bhi01g02370 . 177 413 TUB Transcription Factor Family AT1G25280 56.8 1.5e-70 263.8
Bhi01g02371 . 177 413 TUB Transcription Factor Family AT1G25280 56.8 1.5e-70 263.8
Bhi01g00948 CCT,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.2 9.7e-70 261.2
Bhi12g01742 CCT,ECH 154 386 TUB Transcription Factor Family AT1G25280 53.6 3.4e-67 252.7
Bhi09g02154 . 179 410 TUB Transcription Factor Family AT1G25280 53.0 5.9e-67 251.9
Bhi03g01311 . 176 414 TUB Transcription Factor Family AT1G25280 52.4 2.7e-64 243.0
Bhi03g01310 . 176 414 TUB Transcription Factor Family AT1G25280 52.4 2.7e-64 243.0
Bhi03g01308 . 176 414 TUB Transcription Factor Family AT1G25280 52.4 2.7e-64 243.0
Bhi03g01309 . 176 414 TUB Transcription Factor Family AT1G25280 52.4 2.7e-64 243.0
Bhi03g01307 . 176 414 TUB Transcription Factor Family AT1G25280 52.4 2.7e-64 243.0
Bhi03g01306 . 176 414 TUB Transcription Factor Family AT1G25280 52.4 2.7e-64 243.0
Bhi03g01305 . 176 414 TUB Transcription Factor Family AT1G25280 52.4 2.7e-64 243.0
Bhi03g01312 . 49 287 TUB Transcription Factor Family AT1G25280 52.4 2.7e-64 243.0
Bhi12g01742 CCT,ECH 98 386 TUB Transcription Factor Family AT5G18680 63.1 2.9e-99 359.4
Bhi01g00948 CCT,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.4 1.8e-96 350.1
Bhi04g02131 . 112 430 TUB Transcription Factor Family AT5G18680 53.0 6.9e-85 311.6
Bhi04g01773 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.7e-83 307.0
Bhi04g01774 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.7e-83 307.0
Bhi01g01650 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 1.4e-82 303.9
Bhi01g01648 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 1.4e-82 303.9
Bhi01g01649 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 1.4e-82 303.9
Bhi01g02370 . 115 413 TUB Transcription Factor Family AT5G18680 52.3 1.7e-78 290.4
Bhi01g02371 . 115 413 TUB Transcription Factor Family AT5G18680 52.3 1.7e-78 290.4
Bhi01g02370 . 1 413 TUB Transcription Factor Family AT2G18280 62.0 1.1e-143 507.3
Bhi01g02371 . 1 413 TUB Transcription Factor Family AT2G18280 62.0 1.1e-143 507.3
Bhi03g01311 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 1.0e-136 484.2
Bhi03g01310 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 1.0e-136 484.2
Bhi03g01308 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 1.0e-136 484.2
Bhi03g01309 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 1.0e-136 484.2
Bhi03g01307 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 1.0e-136 484.2
Bhi03g01306 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 1.0e-136 484.2
Bhi03g01305 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 1.0e-136 484.2
Bhi09g02154 . 1 410 TUB Transcription Factor Family AT2G18280 59.8 9.7e-127 451.1
Bhi01g01650 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 5.7e-119 425.2
Bhi01g01648 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 5.7e-119 425.2
Bhi01g01649 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 5.7e-119 425.2
Bhi04g02131 . 1 430 TUB Transcription Factor Family AT2G18280 52.5 4.1e-117 419.1
Bhi01g00948 CCT,ECH 1 387 TUB Transcription Factor Family AT2G18280 54.3 2.0e-116 416.8
Bhi12g01742 CCT,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.7 5.5e-114 408.7
Bhi04g01773 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.0e-112 404.4
Bhi04g01774 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.0e-112 404.4
Bhi01g03152 . 53 385 TUB Transcription Factor Family AT2G18280 50.6 9.8e-95 344.7
Bhi03g01312 . 19 287 TUB Transcription Factor Family AT2G18280 58.7 2.3e-80 297.0
Bhi12g01742 CCT,ECH 1 386 TUB Transcription Factor Family AT2G47900 69.2 6.2e-161 564.7
Bhi01g00948 CCT,ECH 1 387 TUB Transcription Factor Family AT2G47900 68.9 6.2e-161 564.7
Bhi04g02131 . 1 430 TUB Transcription Factor Family AT2G47900 56.1 5.5e-133 471.9
Bhi01g01650 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 1.5e-130 463.8
Bhi01g01648 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 1.5e-130 463.8
Bhi01g01649 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 1.5e-130 463.8
Bhi04g01773 . 1 432 TUB Transcription Factor Family AT2G47900 56.1 7.4e-130 461.5
Bhi04g01774 . 1 432 TUB Transcription Factor Family AT2G47900 56.1 7.4e-130 461.5
Bhi01g02370 . 1 413 TUB Transcription Factor Family AT2G47900 56.0 2.6e-122 436.4
Bhi01g02371 . 1 413 TUB Transcription Factor Family AT2G47900 56.0 2.6e-122 436.4
Bhi09g02154 . 1 410 TUB Transcription Factor Family AT2G47900 55.7 3.8e-118 422.5
Bhi03g01311 . 1 414 TUB Transcription Factor Family AT2G47900 52.0 1.1e-112 404.4
Bhi03g01310 . 1 414 TUB Transcription Factor Family AT2G47900 52.0 1.1e-112 404.4
Bhi03g01308 . 1 414 TUB Transcription Factor Family AT2G47900 52.0 1.1e-112 404.4
Bhi03g01309 . 1 414 TUB Transcription Factor Family AT2G47900 52.0 1.1e-112 404.4
Bhi03g01307 . 1 414 TUB Transcription Factor Family AT2G47900 52.0 1.1e-112 404.4
Bhi03g01306 . 1 414 TUB Transcription Factor Family AT2G47900 52.0 1.1e-112 404.4
Bhi03g01305 . 1 414 TUB Transcription Factor Family AT2G47900 52.0 1.1e-112 404.4
Bhi01g03152 . 53 385 TUB Transcription Factor Family AT2G47900 51.5 2.1e-100 363.6
Bhi03g01312 . 21 287 TUB Transcription Factor Family AT2G47900 56.3 2.6e-74 276.9
Bhi09g00548 . 82 298 TUB Transcription Factor Family AT1G16070 63.8 2.2e-75 280.0
Bhi09g00549 . 82 297 TUB Transcription Factor Family AT1G16070 63.2 3.7e-75 279.3
Bhi04g02131 . 67 430 TUB Transcription Factor Family AT1G43640 71.3 8.3e-149 524.2
Bhi01g01650 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 1.7e-146 516.5
Bhi01g01648 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 1.7e-146 516.5
Bhi01g01649 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 1.7e-146 516.5
Bhi04g01773 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 3.7e-141 498.8
Bhi04g01774 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 3.7e-141 498.8
Bhi12g01742 CCT,ECH 47 386 TUB Transcription Factor Family AT1G43640 51.8 6.7e-106 381.7
Bhi01g00948 CCT,ECH 49 387 TUB Transcription Factor Family AT1G43640 53.4 3.3e-105 379.4
Bhi01g02370 . 68 413 TUB Transcription Factor Family AT1G43640 50.7 6.0e-99 358.6
Bhi01g02371 . 68 413 TUB Transcription Factor Family AT1G43640 50.7 6.0e-99 358.6
Bhi03g01311 . 67 414 TUB Transcription Factor Family AT1G43640 50.7 6.9e-95 345.1
Bhi03g01310 . 67 414 TUB Transcription Factor Family AT1G43640 50.7 6.9e-95 345.1
Bhi03g01308 . 67 414 TUB Transcription Factor Family AT1G43640 50.7 6.9e-95 345.1
Bhi03g01309 . 67 414 TUB Transcription Factor Family AT1G43640 50.7 6.9e-95 345.1
Bhi03g01307 . 67 414 TUB Transcription Factor Family AT1G43640 50.7 6.9e-95 345.1
Bhi03g01306 . 67 414 TUB Transcription Factor Family AT1G43640 50.7 6.9e-95 345.1
Bhi03g01305 . 67 414 TUB Transcription Factor Family AT1G43640 50.7 6.9e-95 345.1
Bhi09g02154 . 34 410 TUB Transcription Factor Family AT1G47270 63.7 1.6e-134 476.9
Bhi03g01311 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.5e-124 443.7
Bhi03g01310 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.5e-124 443.7
Bhi03g01308 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.5e-124 443.7
Bhi03g01309 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.5e-124 443.7
Bhi03g01307 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.5e-124 443.7
Bhi03g01306 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.5e-124 443.7
Bhi03g01305 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.5e-124 443.7
Bhi01g02370 . 34 413 TUB Transcription Factor Family AT1G47270 58.6 1.4e-122 437.2
Bhi01g02371 . 34 413 TUB Transcription Factor Family AT1G47270 58.6 1.4e-122 437.2
Bhi01g01650 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.9e-114 410.2
Bhi01g01648 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.9e-114 410.2
Bhi01g01649 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.9e-114 410.2
Bhi04g02131 . 30 430 TUB Transcription Factor Family AT1G47270 51.7 1.0e-112 404.4
Bhi04g01773 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 1.7e-112 403.7
Bhi04g01774 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 1.7e-112 403.7
Bhi12g01742 CCT,ECH 1 386 TUB Transcription Factor Family AT1G47270 50.5 6.9e-109 391.7
Bhi01g00948 CCT,ECH 1 387 TUB Transcription Factor Family AT1G47270 50.5 3.0e-104 376.3
Bhi03g01312 . 24 287 TUB Transcription Factor Family AT1G47270 59.6 8.5e-83 305.1
Bhi01g03152 . 54 385 TUB Transcription Factor Family AT1G53320 77.9 4.0e-154 542.0
Bhi01g02370 . 20 413 TUB Transcription Factor Family AT1G53320 51.5 3.2e-103 372.9
Bhi01g02371 . 20 413 TUB Transcription Factor Family AT1G53320 51.5 3.2e-103 372.9
Bhi03g01312 . 27 287 TUB Transcription Factor Family AT1G53320 51.3 2.4e-66 250.4
Bhi01g00948 CCT,ECH 98 387 TUB Transcription Factor Family AT3G06380 64.1 1.5e-97 353.6
Bhi12g01742 CCT,ECH 98 386 TUB Transcription Factor Family AT3G06380 62.1 7.2e-95 344.7
Bhi01g01650 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 7.0e-82 301.6
Bhi01g01648 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 7.0e-82 301.6
Bhi01g01649 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 7.0e-82 301.6
Bhi04g01773 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 1.3e-80 297.4
Bhi04g01774 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 1.3e-80 297.4
Bhi04g02131 . 116 430 TUB Transcription Factor Family AT3G06380 51.6 2.9e-80 296.2
Bhi01g02370 . 119 413 TUB Transcription Factor Family AT3G06380 53.2 2.5e-79 293.1
Bhi01g02371 . 119 413 TUB Transcription Factor Family AT3G06380 53.2 2.5e-79 293.1
Bhi09g02154 . 119 410 TUB Transcription Factor Family AT3G06380 51.9 1.6e-78 290.4
Bhi03g01311 . 118 414 TUB Transcription Factor Family AT3G06380 51.2 1.1e-74 277.7
Bhi03g01310 . 118 414 TUB Transcription Factor Family AT3G06380 51.2 1.1e-74 277.7
Bhi03g01308 . 118 414 TUB Transcription Factor Family AT3G06380 51.2 1.1e-74 277.7
Bhi03g01309 . 118 414 TUB Transcription Factor Family AT3G06380 51.2 1.1e-74 277.7
Bhi03g01307 . 118 414 TUB Transcription Factor Family AT3G06380 51.2 1.1e-74 277.7
Bhi03g01306 . 118 414 TUB Transcription Factor Family AT3G06380 51.2 1.1e-74 277.7
Bhi03g01305 . 118 414 TUB Transcription Factor Family AT3G06380 51.2 1.1e-74 277.7
Bhi03g01312 . 24 287 TUB Transcription Factor Family AT3G06380 51.1 1.1e-63 241.1
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011488 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1829 PF01167 Tub 1.20E-45 CL0395 Bhi TF
       

Transcriptome


Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi09g00548 Bhi_Chr09 FPKM 4.993454 6.398857 150.517746 150.501709 38.62566 37.66383 36.478439 8.60006 8.442685 8.064169