Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g00549 TTGACCATAAAATACCTTCTCCATTTTTACATTTTCTTAACTCTTCCCCTGTTTTTGTCTCAAAACTTCAACAATCAAAACGATGATTGGCGACAAGAAAGCGATTATACCTCGCCAATCTTCCTACAACTCTCTGTATTTGAATCCCCTCATTGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGCGGATTCCGGCAAGGTAAAGAGAACTTGATACCTAATACGAAGGATAAACAGAGAGATGAAAATGCAGAGTGTTGCGACAAAGAAAATGCGATTCCCATTAATGAGTTCTGTGCTAATTCGAAGCAGAAATTTGGGGATTTTAAGTCATTTTCGACTGGAAAGGCTTTGAAGCCTTCTTCACTTCATCTCTGTATGCAAATGAACGAGCCCGATAAGGTTTTTGCCTCTAGATTGTGGGATGCCACTGATTCTGAACATTCAAGTTCATTGAAGATTTGGGATTTTTCGGATTCGGAAGCTGCCCCAGCTTCCTCATGGTCCACTTTGCCAAACAGGTCATTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTTCATGGTGGAGCCTTCTATTCTCTATACACAAATGAAGGGAAAGGACGGCAGGACCGGAAGTTGGCAGTGGCCCGTCATCGACGACGGAACGGGAGGTCAGAGTATAAAATAGCTCAGAGTACAAGGGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCAAAATATCATATATGGGATCAGGGGAGCCGTCTGAAACCGATCCCGAGCAAGCCGAGATCGCTTCTGGCTGCTGTAACATTCATGCCTACAATAACCACTTGGACAGGCAGCCATAGAAGCATGAAAGCTTTCATCCCCAAGCATCAATCAATGCAGCTGAAAAACACCAATCAGGTGCAGCACATAGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGGCCAAAGTTCACCAGCTTGTTTCTAAGGTTCCCCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTTAGAGACAGAGGAAGGGCGGTTTCAGGTCTTATGATCCAAACCTCTGTGAAAAATTTTCAGTTGACTTTAGAGGAAAACGGCAAACAAACGATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGTCTGGCTTCCATAGATTCAAAGCTGTGTTGCTCAGTATGATCATATATGGTTGCTTTTCAGCTCTCTTTTGCAGTTCAATCTCTGAACTATCTTCCTTTCAATGTTCTGACTTAGCATAGATTGATGCAAGACTAGTTGATGAGATGTGTTTGTAAATTCTCTCGAGTCTTGAATTTTGATGATTAACAATGTTTAGCTTTGATCA 1469 42.82 MIGDKKAIIPRQSSYNSLYLNPLIDLRHNRSCSDGGGFRQGKENLIPNTKDKQRDENAECCDKENAIPINEFCANSKQKFGDFKSFSTGKALKPSSLHLCMQMNEPDKVFASRLWDATDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSTRGILCNADDSFVGSMTTNLVGSKYHIWDQGSRLKPIPSKPRSLLAAVTFMPTITTWTGSHRSMKAFIPKHQSMQLKNTNQVQHIAGLPREWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11597798 11601418 + XM_039043493.1 Bhi09g00549 43166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g00549 406 Pfam Tub family 152 400 IPR000007 -
Bhi09g00549 406 PRINTS Tubby superfamily signature 227 251 IPR000007 -
Bhi09g00549 406 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Bhi09g00549 406 PRINTS Tubby superfamily signature 362 381 IPR000007 -
Bhi09g00549 406 PRINTS Tubby superfamily signature 383 405 IPR000007 -
Bhi09g00549 406 SUPERFAMILY Tubby C-terminal domain-like 139 404 IPR025659 -
Bhi09g00549 406 MobiDBLite consensus disorder prediction 35 55 - -
Bhi09g00549 406 PANTHER TUBBY-RELATED 1 404 - -
Bhi09g00549 406 PANTHER TUBBY-LIKE PROTEIN 8 1 404 - -
Bhi09g00549 406 Gene3D Tubby Protein; Chain A 144 405 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g00549 Bhi-Chr9:11597798 Bhi01g00948 Bhi-Chr1:17406519 4.97E-14 dispersed
Bhi09g00548 Bhi-Chr9:11597798 Bhi09g00549 Bhi-Chr9:11597798 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1830 PF01167 Tub 1.40E-45 CL0395 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g00549 K19600 - csv:101216780 783.867