Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01500 GTTTTCGTCTTTGACTCTGTACTTTTTTCCTGTTTGACAAACTTCAGACTCTGATTCTCTCTCCTCTCCCTCTCTCTTTCCTCTCCGCCGGAGCTCCGTCGTCAGCACGTTTTCCGTCCGATAATCCTCTTTTTCCCCTATCATCCCGGCGGTTTGCCGTCATACTCTTCCTTTTCCGGCAGAAATCTCTGTTTCTTTGCCGGAGAGTTGGAGTAGATGTCCTGTGGTTTGGCTTTACTTGGAATGGAGATGCTGTGGTTTAGCTTTTGCAGGTGATTGATAGATCTGGAAGCTTAGGAGGAAGGGAGAAATGATGTTTTCCTTGAGAGAGATGGTTTTGTGTGTGTTGTAATCGACGATGTTCATGTATGGATGAGGTAGTCGGCGTAGATGATGACCGGAGCTCAGGCTACTTTTCGGCGAGGGTGGTGGATGTTCGGTGAATCTCTCACATGGAATGGCAGATCTTGTTAGCTACGGGAATGCCAACCGTGACACTGAGCAGGCACTAATTGCTTTGAAGAAGGGTTCTCAACTCCTCAAGTATGGTCGTAAAGGGAAACCAAAATTTTGTCCATTTAGACTTTCTAATGATGAGTTATCTTTAATTTGGATTTCAACTTCTGGTGAAAAGAGTTTGAAATTAGCTTCTGTATCAAGAATTATTCCTGGACAAAGAACTGCTGTGTTCCAACGATATCTACGACCCGAGAAGGATTATTTGTCATTTTCTCTGATTTACAACAATGGAAAACGATCTCTTGATCTGATTTGTAAGGATAAGGTCGAGGCTGAAATTTGGATAGCGGGTCTGAAAGCATTAATAGGTTCTGGTGATGGTGGGCGTTCTAAGATTGATGGATGGAATGATGGAGGCCTCTATCAAGATGACAACAGTGACTTAACTTCAAGTAGCCCAAGTGACAGCTGCAATAGTGTTGCTAGAGATATCAGCTCTCCTGAGGTCTGTGCTAGTTTTAGTCCAAATAAATCTCCAGCAAGCGTTAGGTCTGAGGACCCTACAAGGTCACATGTACCATTGAACCAGACAAATATGCAAGCGAAAGGATCTAGTTCAGATATTTTTCGAGTAAGTGTTTCAAGTGCTCCTAGCTCCTCCAGTCATGGCTCTACACCAGATGACTGTGATGCTCTAGGAGATATATACATATGGGGTGAGGTTATTAGTGATAATTTTATGAAGCCTGGGGCTGATAGAGCTATTAACATGAGCTCAAGGACAGATGTTCTACTTCCAAAGCCACTGGAGTCCAATATTGTTCTAGATGCACAACATATAGCCTGTGGTGTCAGGCATTCTGCCATAGTCACAAGGCAAGGGGAGGTGTTTACATGGGGTGAGGAGTCTGGAGGAAGGCTTGGCCTGGGAATGGGGAAGGATGTAACACAACCTCGCCTTGTTGAAGCCTTGGCAGCTACTACAGTTGATCTTGTGGCATGTGGAGAGTTCCATACCTGTGCTGTTACTATGGACGGGGAACTTTATACTTGGGGAGATGGTGTACATAATGCCGGGCTTCTTGGTAATGGAACTGATGTCAGCCATTGGATGCCAAAGAGAATCTCAGGTATTCTTGAGGGGCTTCAAATTGCATTTGTAGCATGTGGTCCGTGGCATACAGCATTGCTCTCATCTATGGGGCAACTATTCACATTTGGCGATGGTACTTTTGGGGTTTTGGGTCATGGTGACAAAAAAAGCATTTCATATCCGAGAGAAGTGGAATCCTTAACAGGCTTGAGGACAATTGCTGTTGCATGTGGAGTGTGGCATACTGCTGCTGTGGTTGAAGTTATTATGACACAATCTAGTACCAGCATCTCATCAGGAAAATTATTTACATGGGGTGATGGTGATAAGAATCGTTTAGGACATGGAGACAAGGAACCCCGGCTTAAACCTACATGTGTTCCTGCACTAATTGACCACAATTTTCATAAAATTGCTTGTGGTCACAGCATAACTGTTGGATTGACAACATCAGGACAAGTTTTCACAGTTGGAAGTTCAGTTTATGGTCAACTTGGAAATCCCCATGCTGATGGAAAGCAACCATGTTTGGTGGAAGATAAACTTTCCGGGGAGTGTGCTGAAGAGGTTGCTTGTGGTGCATATCACGTGATGGTACTTACCTCCAAAAATGAGGTTTATACTTGGGGAAAGGGTGCAAATGGGAGGTTAGGCCATGGAGACATTGAGGATCGGAAATCACCAACTTTGGTTGAATCTTTGAAGGATAAACATGTCAAAATCATTGCTTGTGGTTCGAACTACTCTGCAGCTATTTGTCTACACAAATCATTGTCAGGTACAGAGCAGTCACAATGCTCTGCTTGTAGACAGGCATTTGGTTTCACAAGAAAGAGGCACAACTGTTACAACTGTGGGCTTGTGCACTGCCACTCGTGTAGTTCCAAAAAAGCATTAAGAGCTGCACTGGCTCCTACTCCTAGGAAATCTTATCGTGTATGTGATTCTTGTTATGCCAAATTGAGCAAGGCATCAGAATCTGGAATTAATTACCGGAAAAATGCTGTACCCCGCCTGTCAGGTGAGAACAGGGACAAGCTGGACAAAAGTGACACAAGACCTCCTAAAACAGCACTTTCAAATATGGATCTGATAAAACAACTCGATAGTAAAGCTGCCAAGCAAGGGAAGAGAACAGATACATTCTCCATTGCTCGCCCCACTCAAGCACACACTCTTCTTCAACTCAAAGATGGTCCAAACACGGTTGATATGCGGAGACTAGCTCCCAAGCCAATTCCTATGGCTAATGGAGTAAATTCCAGATCTGTGTCACCTTTGTCAAGGAGATCTAGTCCGCCAAGGTCTGCTACACCTATTCCTACAGCATCAGGACTTTCCTTCTCCAAAGGTATAGCGGATAGCTTGAAGAAAACAAACGAACTTTTAAATCAAGAGGTTCTAATGCTGCGTGCACAGGTTGAGAGCCTGAGGAAGAGATGTGAACTTCAAGAATCAGAACTTAGGAAGTCAGAGAAGAAAGCACAAGAAGCTATTACATTGGCTGCAGAGGAATCTGCTAAATCCAAAGCGGCAAAAGAAGTTATTACATCACTAACTGCTCAGATTAAACATATGGCCGAAAGGTTACCTGATGGAGTAAAAATGGGCCTTCCTGGAATTAATGACTCTGAAAACATGAGGCCATTGTTTGTTCCAAATGGAATGGAGCAAAATGGTGCCCACCATTTAGCTTCCAATGGAGAGCGTCTTTCAGAATCAGATTCACACAGCTCCTTGTCCTTGGCTTCTTCAGTTGCAACTGATTATTCCTTGAGTAACGGAATTCAAGGTCTAGGTAATTCATCTGGAGAATTCCCTGCAAGTAATGAAACTAACTCAGCCTCAGAGCCAGGGCGATTTCCCTCAGATGGGATAGATGACGATCCAGATGTTAGACTCTCTTATGGTAATAGAGGGGTTTGGGAAAGCCGCCGCAGCAGCAGCATGTCAGAGGGACCTGATAGCTCGGGTCCTTTACTGGATAGTGAGAGTAACACAAGGTCAAGAAGTTCTGCATTGCCAGGAAATGACAATCAAGTTGAGGCTGAATGGATTGAGCAATATGAACCTGGTGTCTACATAACTTTGACGGCACTTCGTAATGGAACTAGAGATCTTAAACGTGTGCGCTTCAGTCGGAGACGATTTGGGGAGCACCAAGCAGAGAGTTGGTGGTCAGAAAATCGTGATAAAGTTTACGAGAAATATAATGTGCGTGGAACTGAAAAATCCTCAATTTCTCCAAGTCCTCCATGAGAGTTGGAGGAAGATGCCTCTGACAAATCTTCAGATTCAGAAGCTTTTGGCAGCAGTCTCTCATTAAAGGCATCCCAGGAGGTAGGAGTTGATCAACCACTTTTCATGTTCGAGGTCAACTTCTGATTCCTTCCTTTATAGTCTTAATTGAAATAGTACGTGTGTAGGAATATGTTTGAATTTGTTAAAATCATTTTTATCATATTCTGAAATACATTTTTAATCACTCAAGATCAATTCAATGATTAATTTTACACTTCTAAATATATTTTAGACTATTAAATTTGATTTTGAAAAATTAAAAGCAGTTTCTGAGTCATTTGAAAAATGACAAGTGATTTTAACCATTTTAGAATCATTCCCATACATGCCAATAGATTACTTGTATATAAGGTTACATTGACTTCTATTTAAATTAGATATTCCTCCTAAATTCACTGCATAGTTAGATTTTAGGTCCTTGAATAATTTGAGCGTACATGTCTTGAAAACTTTTCATTGTTTTACAACAGTATTATATAGTTTTTCAGGCATAAAGCTCAATAGTATCCTACTTGTAATAAGGCTAATTCAGACACGTATTTAAAGGTAAGCTATATACCCAAGAGGAACGTTGAGCAAACCATTTCTTCTATATAGAGAAGATGAAATTAGTCCTATGATGCAAAGGCAACTACTAGACTATGAAGATACGAGGGGAATATGTCCAACTTAAATGTATCTCAACTAATTAATGCATGCTTTCTCAATTAAAAAGTCAGGCTCTCACCTCCATATGTTGGTAGAACTACATAAAAGATAAGATAGGAAGTAATCACTCATTATTTTGCTTAAATTATCATTTTGGTATCTGTTTTTTGGATTTTATTTCATTTTTATTTTTGGACT 4699 41.54 MADLVSYGNANRDTEQALIALKKGSQLLKYGRKGKPKFCPFRLSNDELSLIWISTSGEKSLKLASVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEIWIAGLKALIGSGDGGRSKIDGWNDGGLYQDDNSDLTSSSPSDSCNSVARDISSPEVCASFSPNKSPASVRSEDPTRSHVPLNQTNMQAKGSSSDIFRVSVSSAPSSSSHGSTPDDCDALGDIYIWGEVISDNFMKPGADRAINMSSRTDVLLPKPLESNIVLDAQHIACGVRHSAIVTRQGEVFTWGEESGGRLGLGMGKDVTQPRLVEALAATTVDLVACGEFHTCAVTMDGELYTWGDGVHNAGLLGNGTDVSHWMPKRISGILEGLQIAFVACGPWHTALLSSMGQLFTFGDGTFGVLGHGDKKSISYPREVESLTGLRTIAVACGVWHTAAVVEVIMTQSSTSISSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDHNFHKIACGHSITVGLTTSGQVFTVGSSVYGQLGNPHADGKQPCLVEDKLSGECAEEVACGAYHVMVLTSKNEVYTWGKGANGRLGHGDIEDRKSPTLVESLKDKHVKIIACGSNYSAAICLHKSLSGTEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPTPRKSYRVCDSCYAKLSKASESGINYRKNAVPRLSGENRDKLDKSDTRPPKTALSNMDLIKQLDSKAAKQGKRTDTFSIARPTQAHTLLQLKDGPNTVDMRRLAPKPIPMANGVNSRSVSPLSRRSSPPRSATPIPTASGLSFSKGIADSLKKTNELLNQEVLMLRAQVESLRKRCELQESELRKSEKKAQEAITLAAEESAKSKAAKEVITSLTAQIKHMAERLPDGVKMGLPGINDSENMRPLFVPNGMEQNGAHHLASNGERLSESDSHSSLSLASSVATDYSLSNGIQGLGNSSGEFPASNETNSASEPGRFPSDGIDDDPDVRLSYGNRGVWESRRSSSMSEGPDSSGPLLDSESNTRSRSSALPGNDNQVEAEWIEQYEPGVYITLTALRNGTRDLKRVRFSRRRFGEHQAESWWSENRDKVYEKYNVRGTEKSSISPSPP 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39109171 39119018 + XM_039042230.1 Bhi09g01500 44117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01500 1117 CDD FYVE_like_SF 630 683 - -
Bhi09g01500 1117 Gene3D - 458 626 IPR009091 -
Bhi09g01500 1117 Gene3D - 186 457 IPR009091 -
Bhi09g01500 1117 SUPERFAMILY FYVE/PHD zinc finger 625 692 IPR011011 -
Bhi09g01500 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 440 450 IPR000408 -
Bhi09g01500 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 517 568 IPR000408 -
Bhi09g01500 1117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 697 IPR013083 -
Bhi09g01500 1117 MobiDBLite consensus disorder prediction 963 1041 - -
Bhi09g01500 1117 MobiDBLite consensus disorder prediction 963 984 - -
Bhi09g01500 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 388 398 IPR000408 -
Bhi09g01500 1117 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1105 - -
Bhi09g01500 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 346 IPR000408 -
Bhi09g01500 1117 MobiDBLite consensus disorder prediction 1006 1041 - -
Bhi09g01500 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 402 453 IPR000408 -
Bhi09g01500 1117 CDD PH_PLC_plant-like 12 123 - -
Bhi09g01500 1117 SUPERFAMILY RCC1/BLIP-II 233 621 IPR009091 -
Bhi09g01500 1117 MobiDBLite consensus disorder prediction 697 813 - -
Bhi09g01500 1117 MobiDBLite consensus disorder prediction 916 944 - -
Bhi09g01500 1117 Pfam Transcription factor BRX N-terminal domain 869 899 IPR027988 -
Bhi09g01500 1117 MobiDBLite consensus disorder prediction 746 761 - -
Bhi09g01500 1117 Pfam Transcription factor regulating root and shoot growth via Pin3 1047 1102 IPR013591 -
Bhi09g01500 1117 MobiDBLite consensus disorder prediction 170 207 - -
Bhi09g01500 1117 ProSiteProfiles BRX domain profile. 1048 1103 IPR013591 -
Bhi09g01500 1117 MobiDBLite consensus disorder prediction 783 813 - -
Bhi09g01500 1117 Coils Coil 818 859 - -
Bhi09g01500 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 401 IPR000408 -
Bhi09g01500 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Bhi09g01500 1117 SUPERFAMILY PH domain-like 13 123 - -
Bhi09g01500 1117 SMART fyve_4 619 688 IPR000306 GO:0046872
Bhi09g01500 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 464 511 IPR000408 -
Bhi09g01500 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 516 565 IPR000408 -
Bhi09g01500 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 402 450 IPR000408 -
Bhi09g01500 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 295 343 IPR000408 -
Bhi09g01500 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 346 398 IPR000408 -
Bhi09g01500 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 570 617 IPR000408 -
Bhi09g01500 1117 MobiDBLite consensus disorder prediction 703 718 - -
Bhi09g01500 1117 Pfam Pleckstrin homology domain 15 124 IPR001849 -
Bhi09g01500 1117 Gene3D - 12 127 IPR011993 -
Bhi09g01500 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 465 516 IPR000408 -
Bhi09g01500 1117 PRINTS Chromosome condensation regulator RCC1 signature 297 313 IPR000408 -
Bhi09g01500 1117 PRINTS Chromosome condensation regulator RCC1 signature 347 363 IPR000408 -
Bhi09g01500 1117 PRINTS Chromosome condensation regulator RCC1 signature 388 404 IPR000408 -
Bhi09g01500 1117 PRINTS Chromosome condensation regulator RCC1 signature 404 418 IPR000408 -
Bhi09g01500 1117 PRINTS Chromosome condensation regulator RCC1 signature 506 524 IPR000408 -
Bhi09g01500 1117 PRINTS Chromosome condensation regulator RCC1 signature 564 585 IPR000408 -
Bhi09g01500 1117 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 625 687 IPR017455 -
Bhi09g01500 1117 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1105 - -
Bhi09g01500 1117 Pfam FYVE zinc finger 626 687 IPR000306 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01500 - - - csv:101214149 2070.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g01498 Bhi-Chr9:39109171 Bhi09g01500 Bhi-Chr9:39109171 0 dispersed
Bhi09g01500 Bhi-Chr9:39109171 Bhi11g01571 Bhi-Chr11:45491358 0 dispersed
Bhi09g01499 Bhi-Chr9:39109171 Bhi09g01500 Bhi-Chr9:39109171 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83