Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01512 CATTTGAGGATTAGCCCTTGTACGCGATTTGGGCACAAGATGGTATTCCACCTGTTGTTGACATAAACAAAAACCATTTTTGAAGCAAATTTGAATCTTGGTGCAAATTTTATTTGGGTCCTAAAAAGGGCCTTCCGTACCAACAAAAAAAACCCCTTAAATGTCCCTTTTTTATAACCTATAGAAAGAGAGAAGCGGACTTATTAACCCCACGCCATGTGGAATGCGGCTCAATACTTTCACATGTTCTTCCGGACTTCCATCGTTCTTTAATCCACTCAATGTTGCCAGAATCACCTCGTATTCGATCCCAGATCGCGTTTGTAACCAACAATTAACCAAAAATCGCAATCCCCATTCAGAACTTCTACAAATTTGCTTGCAGCACTGCGGGAGAATCCAAGCCCACAACCTGTTCGACGAAAAGCCTAAATCACTTCTTCAAGCTTTGAGAATCGCGAAGGTCATCCATTCAAAGAGTTTGGAGATTGGAGTTGGCCTCAAAGGGTTGTTAGGTAATGCGATTGTTGACCTTTATGTCAAATGCGGCGATGTGGACTTCGCTCAGAAGGCCTTTTCCCGGCTTGAGAAGAAGGATGTGTTTGCCTGTAACTCGGTGCTTTCTATGTACTCGAAGCAGGGTTTATTTGCAACTGTTTTTCAATCTTTTGTGTCTATGTGGAATCATGGGGTGCGACCTAATGAGTTTACGTTTGCGATGGTTTTATCAGCTTGTTCTAGATTGCAGGATGTTAACTATGGTAGACAAGTCCATTGTGGTGTTTTTAAGATGGGGTTTGGGTTTCGTTCTTTCTGTCAAGCCTTGATTGCAGGGTATGTTCGAGATGGCTTCCCTAAGGAGGCAGTCAAGGTGTTTGATAGAATGCAGAGAGTTGGACATGTTCCTGATCAGATTGCGCTTGTTACTGTTATAAATGCTTATGTGGCTCTTGATAGGCTTGCTGATGCTCGTAAGTTGTTTACCCAGATGCCCAATCCTAATATTGTAGCTTGGAATGTGATGATTTCAGGGCATGCGAAGAGAGGATGTGCTGAGGAAGCTATTTCGTTTTTTCTTGAATTGAAGAGGGCTGGCCTAAAAGCCACTAGATCTACTCTAGGAAGTGTTTTAAGTGCAATTGCTAGTTTATCGATGCATAACTATGGCTCAATGGTTCATGCGCAGGTGATTAAGGAAGGGTTAAACGATAATGTGTATGTAGGAAGTGCATTGGTGAACATGTATGCCAAATGTGAAAAAATGGATGCTGCAAAACAAGTGTTCGATTCTTTAAGTGAGAGAAATCTCATCTTGTGGAATGCTATGCTTGGAGGTTTTGCACAGAACGGACTAGCCCATGAAGTGATGGAATTTTTCTCATATATGAAACGGCATGGACCTCAACCTGATGAGTTTACTTTGACTAGTATTTTCAGTGCATGTGCCTCCATGCAGTATCTTGATTTTGGTCGTCAACTTCATACTTTTATGATCAAGAACAAGTTTGCATCTAATCTATTTGTTGCAAATGCGTTGGTAGACATGTATGCTAAATCAGGAGCTCTAAAGGAAGCAAGAAAACAATTTGAGTTGATGAAAATTCATGACAATGTTTCATGGAATGCAATAATTGTGGGGTATGTACAGGAAGAGTATAATGATGAGGCGTTCTTCATGTTTCGAAGGATGATTTCCAATGGGGCTCTTCCAGATGAGGTGTCTTTGGCCAGTATAGTGAGTGCTTGTGCAAAACTTCAGGAGTTTAAAGGAGGCCAACAATGTCACGGTCTCTTAGTTAAAGTTGGTTTAGATACAAGAATTTGTGCTGGAAGTTCCCTCATTGACATGTATGTGAAGTGTGGCGTTCTTTTGGCAGCTCGTGATGTCTTTAATTCTATGCCCTCTAGAAGTGTTGTCTCAGTAAACGCTTTGATTGCTGGCTACACCATGAGCCACTTAGAGGAAGCTATTTATCTATTTCAAGAGATGCAAATGGTTGGACATAAACCTACAGAAGTCACATTTGCAGAGCTTTTAGATGGATGTGATGGAGCATCTTTGCTGAAACTTGGAAGGCAAATTCACTGTCAAGTTATGAAGTGGGGTCTTCTATTTGGTAGTGAAATGGTGTATGTCTCTCTTTTGTGCATGTATATGAACTCCCAAAGACTCTCAGACTCGGAAACACTCTTCTCTGAGTTGCAGTATCCAAAAAGTTTAATTTTATGGACTGCTTTCATTTCAGGATATGCCCAAAACAATCACTATGAGAAGGCTTTGCGATTCTATCAACATATGCGATCGGAGAATATCTTACCCGACCAAGCAACATTTGCCAGCGTTCTTCGAGCATGTGCTGGATTGTCTTCTCTACAAAACGGTCAAGAGATTCATTCCCTCATCTTCCATACTGGCTTTAACATGGATGAAATAACCTGTAGTTCTCTTATAGACATGTATGCAAAATGTGGTGATGTTAAAAGCTCTGTTCAAGTTTTTCATGAAATGCGACGTAAAAATAGTGTCATATCTTGGAACTCCATGATAGTTGGACTTGCAAAGAATGGCTATGCAGAAGAAGCACTTGAAATATTCAACCAATTGGAGCAACAACAATCCATCATACCGGATGAAGTCACATTCCTTGGTGTTCTATCTGCTTGTAGCCATGCTGGGCGAGTGTCGGAAGGCCGAAAGATATTCAACATGATGGTTAACCATTACCAGTTACAGCCAAGAGTTGATCACTTGGGGTGTATGGTAGACATTCTTGGGAGATGGGGTTTCCTTAATGAAGCAGAGGAGTTCATTAACAGGCTTGGAAGTAAAGCAGATCCAATGTTATGGTCCACTTTGCTAGGGGCTTGCAGAAAACATGGAGATGAAGTTAGGGGGAAGCGTGCAGCTGAGAAACTTATGGAACTGAAACCACAAAGTTCTTCACCATATGTGCTGCTGTCTAGCATATACGCTGCATCAGAGAATTGGAAACGAGCTGACTCTTTAAGGAGGGAAATGAAATTAAAGGGAGTAAAAAAGTTGCCTGGATATAGCTGGATAGAACCAGGAAGAGATATACGAGGCAGCTCATATACGATTCGAGAGCCTTGCAACACCTGATGTAAGAAATAAATTAAGAAAGTCTCTAACCATTCCCTTGTTTATAATAACAATGAAGGATCAAAATGCTTCTGTAGACCTGTTTTATTTATTTATTATTTTTTACGATATGTGGATATGAGAA 3245 40.8 MRLNTFTCSSGLPSFFNPLNVARITSYSIPDRVCNQQLTKNRNPHSELLQICLQHCGRIQAHNLFDEKPKSLLQALRIAKVIHSKSLEIGVGLKGLLGNAIVDLYVKCGDVDFAQKAFSRLEKKDVFACNSVLSMYSKQGLFATVFQSFVSMWNHGVRPNEFTFAMVLSACSRLQDVNYGRQVHCGVFKMGFGFRSFCQALIAGYVRDGFPKEAVKVFDRMQRVGHVPDQIALVTVINAYVALDRLADARKLFTQMPNPNIVAWNVMISGHAKRGCAEEAISFFLELKRAGLKATRSTLGSVLSAIASLSMHNYGSMVHAQVIKEGLNDNVYVGSALVNMYAKCEKMDAAKQVFDSLSERNLILWNAMLGGFAQNGLAHEVMEFFSYMKRHGPQPDEFTLTSIFSACASMQYLDFGRQLHTFMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMISNGALPDEVSLASIVSACAKLQEFKGGQQCHGLLVKVGLDTRICAGSSLIDMYVKCGVLLAARDVFNSMPSRSVVSVNALIAGYTMSHLEEAIYLFQEMQMVGHKPTEVTFAELLDGCDGASLLKLGRQIHCQVMKWGLLFGSEMVYVSLLCMYMNSQRLSDSETLFSELQYPKSLILWTAFISGYAQNNHYEKALRFYQHMRSENILPDQATFASVLRACAGLSSLQNGQEIHSLIFHTGFNMDEITCSSLIDMYAKCGDVKSSVQVFHEMRRKNSVISWNSMIVGLAKNGYAEEALEIFNQLEQQQSIIPDEVTFLGVLSACSHAGRVSEGRKIFNMMVNHYQLQPRVDHLGCMVDILGRWGFLNEAEEFINRLGSKADPMLWSTLLGACRKHGDEVRGKRAAEKLMELKPQSSSPYVLLSSIYAASENWKRADSLRREMKLKGVKKLPGYSWIEPGRDIRGSSYTIREPCNT 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39998347 40001687 - XM_039043979.1 Bhi09g01512 44129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01512 965 Pfam E motif 887 947 IPR046848 -
Bhi09g01512 965 PANTHER OS07G0578800 PROTEIN-RELATED 462 560 IPR045215 GO:0003723|GO:0009451
Bhi09g01512 965 PANTHER OS07G0578800 PROTEIN-RELATED 561 632 IPR045215 GO:0003723|GO:0009451
Bhi09g01512 965 PANTHER OS07G0578800 PROTEIN-RELATED 730 948 IPR045215 GO:0003723|GO:0009451
Bhi09g01512 965 PANTHER OS07G0578800 PROTEIN-RELATED 86 199 IPR045215 GO:0003723|GO:0009451
Bhi09g01512 965 PANTHER OS07G0578800 PROTEIN-RELATED 243 460 IPR045215 GO:0003723|GO:0009451
Bhi09g01512 965 PANTHER OS07G0578800 PROTEIN-RELATED 635 727 IPR045215 GO:0003723|GO:0009451
Bhi09g01512 965 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 699 IPR002885 -
Bhi09g01512 965 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Bhi09g01512 965 Gene3D Tetratricopeptide repeat domain 672 794 IPR011990 GO:0005515
Bhi09g01512 965 Gene3D Tetratricopeptide repeat domain 795 960 IPR011990 GO:0005515
Bhi09g01512 965 Gene3D Tetratricopeptide repeat domain 196 313 IPR011990 GO:0005515
Bhi09g01512 965 Pfam PPR repeat 737 766 IPR002885 -
Bhi09g01512 965 Pfam PPR repeat 200 225 IPR002885 -
Bhi09g01512 965 Pfam PPR repeat 464 493 IPR002885 -
Bhi09g01512 965 Pfam PPR repeat 436 459 IPR002885 -
Bhi09g01512 965 SUPERFAMILY TPR-like 231 928 IPR011990 GO:0005515
Bhi09g01512 965 Pfam PPR repeat family 124 172 IPR002885 -
Bhi09g01512 965 Pfam PPR repeat family 259 306 IPR002885 -
Bhi09g01512 965 Pfam PPR repeat family 767 815 IPR002885 -
Bhi09g01512 965 Pfam PPR repeat family 667 712 IPR002885 -
Bhi09g01512 965 Pfam PPR repeat family 563 608 IPR002885 -
Bhi09g01512 965 Pfam PPR repeat family 361 408 IPR002885 -
Bhi09g01512 965 Gene3D Tetratricopeptide repeat domain 33 195 IPR011990 GO:0005515
Bhi09g01512 965 Gene3D Tetratricopeptide repeat domain 412 520 IPR011990 GO:0005515
Bhi09g01512 965 Gene3D Tetratricopeptide repeat domain 314 411 IPR011990 GO:0005515
Bhi09g01512 965 Gene3D Tetratricopeptide repeat domain 523 616 IPR011990 GO:0005515
Bhi09g01512 965 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Bhi09g01512 965 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 735 769 IPR002885 -
Bhi09g01512 965 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Bhi09g01512 965 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Bhi09g01512 965 PANTHER OSJNBB0070J16.5 PROTEIN 462 560 - -
Bhi09g01512 965 PANTHER OSJNBB0070J16.5 PROTEIN 730 948 - -
Bhi09g01512 965 PANTHER OSJNBB0070J16.5 PROTEIN 635 727 - -
Bhi09g01512 965 PANTHER OSJNBB0070J16.5 PROTEIN 243 460 - -
Bhi09g01512 965 PANTHER OSJNBB0070J16.5 PROTEIN 86 199 - -
Bhi09g01512 965 PANTHER OSJNBB0070J16.5 PROTEIN 561 632 - -
Bhi09g01512 965 TIGRFAM PPR: pentatricopeptide repeat domain 262 294 IPR002885 -
Bhi09g01512 965 TIGRFAM PPR: pentatricopeptide repeat domain 464 498 IPR002885 -
Bhi09g01512 965 TIGRFAM PPR: pentatricopeptide repeat domain 198 229 IPR002885 -
Bhi09g01512 965 TIGRFAM PPR: pentatricopeptide repeat domain 769 804 IPR002885 -
Bhi09g01512 965 TIGRFAM PPR: pentatricopeptide repeat domain 737 768 IPR002885 -
Bhi09g01512 965 TIGRFAM PPR: pentatricopeptide repeat domain 364 397 IPR002885 -
Bhi09g01512 965 TIGRFAM PPR: pentatricopeptide repeat domain 668 700 IPR002885 -
Bhi09g01512 965 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01512 - - - cmax:111473755 1659.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01104 Bhi-Chr7:34834427 Bhi09g01512 Bhi-Chr9:39998347 4.30E-31 dispersed
Bhi07g01105 Bhi-Chr7:34834427 Bhi09g01512 Bhi-Chr9:39998347 4.30E-31 dispersed
Bhi09g01512 Bhi-Chr9:39998347 Bhi03g01415 Bhi-Chr3:29564124 2.48E-11 dispersed
Bhi10g01074 Bhi-Chr10:21808623 Bhi09g01512 Bhi-Chr9:39998347 7.01E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1213 . Blo12g01108 . Bda03g00030 . Bpe04g00020 Bma04g00028 . . Cmo12g00334 . Cma09g01089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01097 . . . Car09g00987 . . Bhi09g01512 . . . . . . Cla09g00917 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011120 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 3 1 0 1 0 1 27