Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01596 TTTTTTAGCCATTCTTCCCTATCTATCCCTTTTCTAAACCCTATTTTCCCCATCAGCCACCTCCTCCCTCCCATTACCAGCCACTGCACCTCGCCCCGCCGCTCGCCGTTCCTGCTCGACACCATTTGATCGACTGCCGCCGCACGCTGCACCCTCAGCTGTCGAAATATCAGCCGACCCTCTCGGTGCAGCATCCTGCATCTGGCCGTCGCCGATTGGTTTCTCCATTTAACGCTGGCATCTCTATACTCTTCTCATAATCTGGAAGATCTACTGCTCATTCAAATCTTGCCGCCGACAGAGCTAGTTAGTTCGTCATGGCGGACGTGATGCTGATGAAGGAGATTGAGGAAACGGCTGGTCGGCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCTATTCGTCTCCCTCCTGGCGAGGATTTCGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTTGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAGTAATTAAGGATGATGGTTTGTGGATGCCTGTTGACCCTACTACACAGAAAACTTTAGGTTACTGCTTTATTGAGTACGGCACCCCACAGGAGGCTGAGCTTGCTAAAGAGAAAACTGATGGGTACAAGTTGGATAGAGCACATATTTTCACTGTTAACATGTTTGAGGACTTCGACAGATTTATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAGCCCATATACTCCTGGGGAGAATCTTCAACAGTGGCTAACTGATGAAAAAGCACGGGATCAGTTTGTTATCCGATCTGGTTCCGATACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTTTACAAGCGTCAATTCTGGACCGAGAGTTTTGTTCAGTGGTCCTCATTGGGGACTTACCTAGCAACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATTTGGTGACGTACAGCAGTCATGAGCCCAGCAATCCCCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTAAGAACTGGAAAAGTAATGAGAGATTTTAAGGGAAGTCCTGATGATTTTGCCATTGGAGGAACTGGTGGTGTTGCTGGGGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGAAAAGATGATAAATACTTTGCCAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATTGACAAAAAGTCTTTGAAGGTTGAAAATGTAATGGATTTCTGCTGGTCCCCTACAGATCCCATTATTGCACTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTCCAAATCCCCAGCAAGGAGGAGTTGAGGCAGAAAAATCTTTTCAGCGTTAGCGATTGTAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACAAAGACGAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCCATTGAAGTGCTGGAGCTTGAGAATAAGAATGACAAGATCATTGCCTTTGCCTGGGAGCCAAAGGGGCACAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCAGCACTCACAACAGTGGCCGAGTGTCAAAACTTACAACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCTGGACGATTCATTATTCTTGCTGGTTTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACGATGGCGACCGCAGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACCGGAAGGTATGTTGCAACTGCTGTAACTTCAGTCCATGAGATGGAAAATGGTTTCAACATATGGTCCTTCAATGGAAAACTACTCTATCGAATCTTGAAGGATCATTTCTTTCAGTTTGCATGGCGGCCAAGGCCACCATCCTTCTTGGGTCCAGAAAAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACAGCAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTACTTAGCGAGCAGGAGCGTGAGAAACGGAGAATGTTGAAGGATGAGTGGGACAAGTGGGTGAATGAATGGAAGAGATTGCACGAAGAAGAGAAGTTGTTGCGGCAGAAGCTGCGGGATGGCGAAGCCAGCGACGAAGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTCGAAGAGATTTTGGATGTGTCGGAGGAAGTTTTGTCCTTTGATTTTGGGCAGTAATGAGGTTCTTAACATAAATAACCTTATTTGCATGCACGAAATTAGGTAGCTCTGACAATGCTTTCCCCTCCTGCCATAAACCTCACCAATTACTCAATACTTTTGCCCCTTCCCCTTCTCTCAAAATGCAGCTTGGGAAATTTTCCTTCCCCCTTAAAATTTAAATTTTTTTGTATTTGTATGCCTTTATTTGATTGTTATTGCTATTATCTCAATCAAATAACTTCTTCACATCAGTTATGTAATGTATTTTTCCCATTTCGCCCCAAA 2747 44.67 MADVMLMKEIEETAGRLGIDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEISPYTPGENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRQFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLGPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQEREKRRMLKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFGQ 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42865392 42870587 + XM_039041547.1 Bhi09g01596 44213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01596 719 CDD RRM_eIF3B 59 143 IPR034363 -
Bhi09g01596 719 Gene3D - 180 437 IPR015943 GO:0005515
Bhi09g01596 719 SUPERFAMILY DPP6 N-terminal domain-like 218 601 - -
Bhi09g01596 719 SUPERFAMILY RNA-binding domain, RBD 58 141 IPR035979 GO:0003676
Bhi09g01596 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Bhi09g01596 719 Gene3D - 55 154 IPR012677 -
Bhi09g01596 719 SMART rrm1_1 61 143 IPR000504 GO:0003723
Bhi09g01596 719 PIRSF Transl_init_eIF3b 7 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bhi09g01596 719 Coils Coil 688 708 - -
Bhi09g01596 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Bhi09g01596 719 Pfam Eukaryotic translation initiation factor eIF2A 406 607 IPR013979 -
Bhi09g01596 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 6 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bhi09g01596 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bhi09g01596 719 Gene3D - 438 615 IPR015943 GO:0005515
Bhi09g01596 719 PANTHER BNACNNG51870D PROTEIN 6 713 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00676 Bhi-Chr1:12530364 Bhi09g01596 Bhi-Chr9:42865392 4.49E-47 dispersed
Bhi04g02000 Bhi-Chr4:52788661 Bhi09g01596 Bhi-Chr9:42865392 3.67E-69 dispersed
Bhi09g01596 Bhi-Chr9:42865392 Bhi09g01600 Bhi-Chr9:42916438 0 dispersed
Bhi09g01596 Bhi-Chr9:42865392 Bhi09g01597 Bhi-Chr9:42866173 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01596 K03253 - csv:101213144 1434.47