Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01600 CCCATCCCAGCTTCTTTTGTTTTCTCTAAAACCCTACTACTCGTTCAGGCATTCCCTCCCTCCCATTACCAGCCAACTGAACCCCGCACGCTGTTCCTGTCCCGCCGCCGTCTCACCGGCCGCCGGCGGACTCTGCCTTCCTCAGCTGCCGGAGTTTCACCCTTCCCTTTCGCTGTCGCCGATTTTCTGCTCTCTCCAACGCTGGCATCTCTCTGCGCTTCTCATAATTTGAAAGATCTACCGGTCGCGTGACTTTTGCCGCCGACAGAGCTAGTTAGTTCGTCATGGCGGACGTGATGCTGATGAAGGAGATTGATGATACGGCTGGTCGGCTTGGGATAGATCTCTCCCAAGTTGATTTTGATGCCATTCGCCTACCTCCTGGCGACGATTTCGGAATTATTAGTGATGATGAAGAGGTTTTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTTGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTTGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAATAATTAAGGATGATGGTTTGTGGATGCCGGTTGACCCTACTACGCAGAAAACTTTAGGTTACTGTTTTATCGAGTATGGCACTCCACAGGAAGCTGAGCTTGCTAAAGAGAAGACTGATGGGTACAAGCTGGATAGAGCTCATATTTTCACTGTTAATATGTTTGAGGACTTCGACAGATTTATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAGCCCATATACTCCTGGGGAAAATCTTCAACAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTCTTCTGGAATGATGCTAGGCATTTGAAGCCCGAACCTGTCTACAAGCGTACATTCTGGACCGAGAGCTTTGTGCAGTGGTCCTCATTGGGGACTTACCTAGCGACAATTCACCGACAGGGAGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGTTTTGCCCATCAACAGGTTAAGTTGATTGATTTTTCTCCTGGTGAGAAATATCTGGTGACGTACAGCAGTCACGAGCCCAGCAATCCCTGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTAAGAACTGGAAAAGTGATGAGAGATTTCAAGGGAAGTCCCGATGATTTTGCCATTGGAGGAACTGGTGGTGTTGCTGGGGTATCTTGGCCTGTTTTTAGGTGGGGCGGTGGGAAAGATGATAAATACTTCGCCAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATTGACAAAAAATCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACAGATCCCATTATTGCACTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTCCAAATCCCCAGCAAGGAAGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGCGATTGCAAAATGTACTGGCAAAGCAACGGGGATTATCTTGCTGTCAAGGTTGATAGATATACCAAGACGAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCCATTGAAGTGTTGGAGCTTGAGAATAAGAATGACAAGATCATTGCATTTGCCTGGGAGCCAAAGGGGCACAGGTTTGCAGTTATCCATGGTGACAATCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCACACACAACAGTGGCCGAGTGTCAAAACTTACAACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCTGGACGCTTTATTATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTCGATGAACTGGAGACGATGGCAACTGCGGAGCACTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTATGTTGCTAGTGCTGTAACTTCTGTTCACGAGATGGAAAATGGTTTCAACATATGGTCCTTTAATGGAAAACTCCTCTACCGAATCTTGAAGGACCATTTCTTTCAGTTTGCATGGCGGCCGAGGCCACCATCCTTCTTGAGTCCCGAGCAAGAGGAAGAGATAGCAAAGAATTTGAAAAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTACTGAGTGAACAAGATCGCGAGAAACGGAGAATGTTGAAGGACGAATGGGACAAGTGGGTGAATGAATGGAAGAGATTGCATGAAGAAGAGAAATTGTTGCGGCAGAAGCTGCGAGATGGTGAAGCCAGCGACGAAGAAGAGGAATACGAAGCCAAAGAGGTCGAAGTCGAAGAGATTCTGGATGTGTCAGAGGAAGTTTTGTCCTTTGATTTTGGGCAGGAATGAGGATCTTAATAACCTCATTTTCATTGCCATGATTTATTAGGTAGGTGGTATCTCTGACATCACCTAAATGCAACTTTGGGGAATTTTGTTTTCTCCCTTAAAATGATTAATTTTTGTTTGGTATCACTATATTATCTCAGTCAGTAACTTCAGATGAGTTATACAATGTATTTTTGTTTTTACCTTTAACTAAGCCCTTCAGACCCAAAA 2654 44.95 MADVMLMKEIDDTAGRLGIDLSQVDFDAIRLPPGDDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGIIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEISPYTPGENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRTFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPCDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVASAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEQEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFGQE 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42916438 42921141 - XM_039042778.1 Bhi09g01600 44217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01600 719 PANTHER BNACNNG51870D PROTEIN 6 712 - -
Bhi09g01600 719 CDD RRM_eIF3B 59 143 IPR034363 -
Bhi09g01600 719 SUPERFAMILY RNA-binding domain, RBD 58 141 IPR035979 GO:0003676
Bhi09g01600 719 SMART rrm1_1 61 143 IPR000504 GO:0003723
Bhi09g01600 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bhi09g01600 719 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
Bhi09g01600 719 Gene3D - 59 143 IPR012677 -
Bhi09g01600 719 PIRSF Transl_init_eIF3b 7 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bhi09g01600 719 Gene3D - 180 383 IPR015943 GO:0005515
Bhi09g01600 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Bhi09g01600 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Bhi09g01600 719 Coils Coil 687 707 - -
Bhi09g01600 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Bhi09g01600 719 Gene3D - 414 624 IPR015943 GO:0005515
Bhi09g01600 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 6 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g01596 Bhi-Chr9:42865392 Bhi09g01600 Bhi-Chr9:42916438 0 dispersed
Bhi09g01600 Bhi-Chr9:42916438 Bhi05g01961 Bhi-Chr5:60667688 6.89E-19 dispersed
Bhi09g01597 Bhi-Chr9:42866173 Bhi09g01600 Bhi-Chr9:42916438 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01600 K03253 - csv:101213144 1431.77