Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01646 TGCATTGTATAAGCCATAGAACTTGGCCCTACCATCTTCTTCTTTCTCAATAATGCCCTTTAAATATCCAAGTGAGACCTTTGTGTTTTTTAAACTTCAATGGAATTCTTCAAGCTTTTTGGCATGTCTTTCATTTCTTGTTCTAAGCTTACCAAGTTCAGGTTGTTGGTTATTGAGTTTAAGGAGCAGCAAGTTTTCGATAAAGCTTTTCGGTTCTTCGTCGAAGCTTCAAAGACGGTCGGGTTTGCTTTGTTCTTATCTCTTCTTGCTCTAGTTGGTGCGTCGGCGGGGACGGTCATCGGAGCTTTCAAAGGCCATGGCGCGGCCATAGGAGCTATTGCCGGCGCCGCCACAGTCCTTCAAATATTGAATTGCACTGAATCTGGGCATAGATATACATTATCAAGGGAAGCAATAATGGAAAGGTTGATGGATGGGAAGGGGTTAATGAACTGGGCGAACAACTTCTCGGAGTATATATGTCGAGAGATATCGGAGTTGGTCGACGTCACCGGAGAAAGTTGTGTGGAAGGGATGTCAATGGAGAGTGTTGGAATGTTGCCTGTTTGTCAATATGATCATAGCAAGATGAACTACTCCATTTCTTGTTCCATTTGCTTAGAGGAATTGGAAGATGGAGAATTTGGTAGGATACTTCCAAATTGTGATCATTTCTTTCATGTGGGATGCATAGACCAATGGCTACACTTGCATGGATCTTGCCCAATTTGTAGAAAATGTTGTATTTAAACCATACCTCATTATATTGTAAAATTAATTTTGTTTTTTTTTTCTATATATATATTTAAAAAAAGAAAATATATTTAAGTCATTATTA 838 39.02 MEFFKLFGMSFISCSKLTKFRLLVIEFKEQQVFDKAFRFFVEASKTVGFALFLSLLALVGASAGTVIGAFKGHGAAIGAIAGAATVLQILNCTESGHRYTLSREAIMERLMDGKGLMNWANNFSEYICREISELVDVTGESCVEGMSMESVGMLPVCQYDHSKMNYSISCSICLEELEDGEFGRILPNCDHFFHVGCIDQWLHLHGSCPICRKCCI 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44221172 44226425 - XM_039041526.1 Bhi09g01646 44263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01646 216 CDD RING-H2_PA-TM-RING 170 212 - -
Bhi09g01646 216 Pfam Ring finger domain 169 212 IPR001841 -
Bhi09g01646 216 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 29 215 IPR044523 -
Bhi09g01646 216 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
Bhi09g01646 216 SMART ring_2 170 211 IPR001841 -
Bhi09g01646 216 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 29 215 - -
Bhi09g01646 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 215 IPR013083 -
Bhi09g01646 216 SUPERFAMILY RING/U-box 160 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01646 - - - bhj:120085514 410.609
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g01646 Bhi-Chr9:44221172 Bhi11g00296 Bhi-Chr11:6815771 1.97E-19 dispersed
Bhi09g01646 Bhi-Chr9:44221172 Bhi01g01040 Bhi-Chr1:19092162 4.02E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g512 . Blo03g01452 Bda07g00364 . . Bpe08g01122 . . . . . Cma09g00954 . Car09g00868 . . . Bhi09g01646 . . . Hepe01g1274 . . . . . . . . . . . . . . Csa07g01092 . . . . . . . . Bma07g01295 Bma14g00336 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004599 1 4 1 0 1 1 2 1 1 2 1 1 2 1 1 2 1 2 3 1 1 1 1 1 2 1 1 3 1 1 42