Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01710 AATTTCCCTCGGTGGCTTCAGTTCCTTTCCCCAAGAACGTTGCTCTCTTCTCCCCGCGGGTTCCGTCGCGCACTAATTTTCTCCTGCATTAACTTTCGCCGGCGATTCTTCCGTACGTCTGCCGGAATCCGATGCTTCTTTACAATCTGTTTCATAGCGTCGACTGTGGATTCTGGCGGTCTTAGATTTACGTTCATCGTTTTTTTTATCTTCGCTGCTAATATTGATGTAGTGTTCGGTATTGTCCTATCGTGAGTTTGAATAGCTTCTAGTAGGGATTGACTATCAACCAAAGGCCATACAGGACTGGAACTACATTAGAGTAATGGGATCTTCAGATGATGAGGCTGAGAACTTGCCACTATCTGTCTCAAATTATCACTTCGTGGATCATATGGATGAACCTATTTCATTCTCTATTTTGCCGATTCAATGGGATGAAGGGGAGAGATTGGAGGGCAGTCAAGAACCTGTTTTCCTGCATGGAACAGCCGATGGTGGACTTCAAAAGGTTTATAAACAGGTTACTGCATGGAGGTTTAATATTTGCGGTTCAAAGCCAGAGATATCGGTGCTTTCTAAAGAAAATGTGTGGATTAAGCTTCAGAAACCTAGAAAGAGCTTTGAGGATACCATTAGAGCCATCTTGATCACAGTACAATGCCTCCATGCTTTGAAGAGGAATCCAGATACATCTAGCAAATCTTTGTGGGATCTATTAGCCAGAATCTTCAGCTCGTATGAAGTGAGGCCTTCACAGAATGATTTGGTGGATCACATGCCTCTAATCAGTGAAGCAGTTAACAGGGATGATATATTGGCGAAGTCTCAGTTGTTACTTGCATTCCTTGAAGAGAAGCCCGTTAAGAGAACGTCATCTCTTGAGTTGTACTCTCAGGATGGTCAACGTAATGTGCAGCCTAGTTTTATAGTTGATGATTCAGATGATGAAGACATGGTTGATGATGCTGTTGAAGAGGAGAGTGATGATGATGTCTTTGATTCTGTCTGTGCATTTTGTGATAATGGTGGCAACATTATATGCTGTGATGGGAGATGCATGAGGTCCTTTCATGCAACTCCAGAGAATGGTGATTGTTTCTCGCTTGGTCTCTCTAGAGAAGAAGTAGATGCAATTGAAACCTTTATTTGCAAGAATTGCGAGTATAAACAGCACCAGTGTTATGCTTGTGGGAATTTAGGTTCATCCGATCAGTCTTCTGGTGCTGAGGTCTTCCAATGTGTAAATGCAACTTGTGGTTATTTTTATCATCCTAAATGTATTTCAAAATTGCTTCATCGGGAGAATAAAGTTGCTGCTGGAGAACTTGAGAAGAAGATTGCTTCTGGAGAATCTTTCTCATGCCCTGTGCATAAGTGCTCTGTTTGTAAACTCGGCGAAAATAAAAAAGTATGGGAATTACAGTTTGCTGTTTGCCGACGTTGTCCCAAGTCATATCATAGAAAATGCTTGCCAAGGATGATCACATTTGAAGATTCAGAGGATGGCGAAACCCCAACCAGGGCATGGGAAAAGCTATTGCCCAATCGCATATTGATATATTGCTTAGACCATGAGATTGATGAAGAAATTGAGACTCCAGCGAGAGACCATATCAAATTCCCTGGTCTTGAAGAGAGTAGGATTCATATTCAGAAAAAGAAACTTCCTACTGGTGATACAACACAAGGGAAGACAATAGGCTTTCGTCGGATTGGGGAGAATGTTGCATCGAAAAAGGAAAGTATGTCAGATGACCTTCAGGGAAAGTCTGCTGCAAAAGTATCCAAATCATTTGAGAGGTCCTCATTTGATGGGAAGGTTGTTGGCAAAATGGCTGAGAAATCATTGTTGGGTTCTGAGTCTAGAAAAGTGAAATTGGGTAATGTTTCAAGAAAGTCTTTCAATCAAAATGGAGAAGCTGTCCTCATGGACATTGACAAGACTATCAAATTGAAAAAATCCTCCTTAGTTGGCAAGGCTGCCATGCCAACCAAGAGACCTGATCAAAATAAGGCTCCCAAGGAGGATAGGAGTGAACTGGGAAAGTTTGATGCCTCTAAGCCTCTGACAAAGAGGTTGAACAGTGGGATGTACCTATTAGATGCCGATTCAGAGAGGAGGTTAATGGATTTGATGAAAAATGTTTCATCTTCAATTACTTTGGAGGACGTAATTCGGAAGCACAAAGTTCCATCTACTCATGCATATTCTTTAAAAAATGTAGTGGACAAGACAATTAAAATGGGGAAGTTGGAAGGCTCAGTTGTGGCTGTTCGAGCTGCTCTACTCAAACTTGAAGAAGGATGTTGCATTGAGGATGCAGAAGCTGTTTGTGAGCCTGAAGTTCTTAATCACATATTTAAGTGGAAGAACAAACTCAAGGTATATCTTGCACCATTTCTTTATGGCATGCGCTACTCCTCCTTTGGTCGTCATTTTACAAAAGTTGAGAAACTTGTGGAGATTGTTGATAGGCTTCATTGGTACATAGAGAAAGGCGATACAATAGTGGATTTCTGCTGCGGTGCAAATGATTTTAGTGTTTTAATGAAGAAAAAACTTGATGAGATTGGTAAACGATGCTCGTACAGGAACTTTGACTTTATTCCGCCGAAGAATGATTTCAATTTTGAAAAACGGGATTGGATGACTGTGCAACCCAAGGAATTGCCTAAAGGATCCCAATTGATCATGGGGCTAAATCCTCCATTTGGAGTTAAGGCTGCTTTGGCAAACAAGTTCATAGATAAAGCTCTTGAGTTTAATCCAAAGCTCCTTATTCTTATTGTTCCTCCTGAAACAGAGAGGTTGGATAGAAAAAAGACTCCTTATGACCTGGTTTGGGAGGATAATGAGTTTTTGTCAGGAAAGTCATTTTATCTTCCCGGATCTGTCAATGCCAAAGACAAGCAGATGGATCAGTGGAATGTCCGGCCACCTGTGCTCTATTTGTGGAGTCGTCGTGACTGGACTGATAAACATACAGCCATAGCCCGAGAGCATGAACATCTCTCGCCAAGGAAACAAGAGGAATCAGAAAAAGGGAAGACTGCTGATACTTCAAGGGTGAAGCAACCTGAGGAGTCTGAAAAGGGAAAGAGTTCTGATTTGTCAAGGCTCAGGCAACAAGAGGATTCAGGAATGGGAAAAGGTTCCGATGTGCCGAGGCCTAAGCAATTGGAGTCAGAAAAAGGCCAAAGCTCCAAAACTTCGGCTGATGATATTCATCTCCATGAAACATTCCTGATGAAAGAATCTACAATACTAGCAGCAGATGAACCAGAAGATTCGAAGAGTGGATCGATTGTCTCTGAAGTTCATAAAAATGGGTCCACGAAAACATCGAAGAGGGATAGTGACAGAGAGAGTCATGACAGTCGAGACGTCCGTCCTAATCTGTCTCCTGAGGCTCCAAGGAAGAAGAGGCAGCGTTTTGAAGAAATACCTAGAAGAGGCGATGGCGAGACATCAGAAGAGAGCAGACGTGATGGTAAAAGGCCTTTAAATGAGATTAATCAGAGACCTCATGCTTCTCCAAATGTGAGTGATCATATATCCTATAAGTCTGTTGAGAGGCCTTCATATGCTGATGCGGGAGGGATTGAACGTCAGCAGTCTGGGTTGACCATGCCTGACCCGAATACCAACTTTGGAGCTCCTTACGATGCACAAACCAGCTTAACTGATGACATTGCCAGAAAGTACAACCTCAATGCTGAGGAGTCTTTTTCAATTGGGACCACTGGATGGTCAAACAATGCAAGTCCGATTTATGATATTGGTTCTAGACACATCGAGGAACAACGTAACGTGGATCAAATGGGAGGACATGTTGATGGCCTTAATTATAAACCATACGCCACTGGGGTTGGCACGTACATGAGGGACTCCGAAATACGGCCACATATTCGTCATTACGGGCACCCAGATACTGACAATTTAAGAAGCAATTACCAAACTGGACCTGATCCCAGGTATAGCAGGATTGGGGCATTCCCATCTACTTATGGGCATCTGAGTACATTTCCTGAACCATCTCACTGGATGAACACTTCAGCAACGCAACGATATGCACCTCGCCTCGATGAGTTGAACCACACTAGATTGGGAGGAATGGGTGCTGGCCATCAGATGAACGGCAGCAGCACTTTCGACCCTAGAGAACGCCTATCCTCTGGTTTCAGGGGTGCGCCACAGGGCTTTGCACCTGGTCCTCAATACCCGTATTCGAACCAGAATTCAGCGGGTTGGCTTAATGAGTAGTACAATAATCTAACTCTTGCTTGGCCTCATGGAACTGTTGCTTTTTGGCTAACCAAACCACATTACTTGATGGATAAACTGAAATGATCTTGTGTATGTAAGTAGTAAATTTAGCTTTTAAAAATAGCCTTACTGACGGCGATGATCTGTGTAAGTATGTAATATGTTCATTGTTTCAAGTAAAATGACTATCTCGAAATCTGCTCAA 4475 42.59 MGSSDDEAENLPLSVSNYHFVDHMDEPISFSILPIQWDEGERLEGSQEPVFLHGTADGGLQKVYKQVTAWRFNICGSKPEISVLSKENVWIKLQKPRKSFEDTIRAILITVQCLHALKRNPDTSSKSLWDLLARIFSSYEVRPSQNDLVDHMPLISEAVNRDDILAKSQLLLAFLEEKPVKRTSSLELYSQDGQRNVQPSFIVDDSDDEDMVDDAVEEESDDDVFDSVCAFCDNGGNIICCDGRCMRSFHATPENGDCFSLGLSREEVDAIETFICKNCEYKQHQCYACGNLGSSDQSSGAEVFQCVNATCGYFYHPKCISKLLHRENKVAAGELEKKIASGESFSCPVHKCSVCKLGENKKVWELQFAVCRRCPKSYHRKCLPRMITFEDSEDGETPTRAWEKLLPNRILIYCLDHEIDEEIETPARDHIKFPGLEESRIHIQKKKLPTGDTTQGKTIGFRRIGENVASKKESMSDDLQGKSAAKVSKSFERSSFDGKVVGKMAEKSLLGSESRKVKLGNVSRKSFNQNGEAVLMDIDKTIKLKKSSLVGKAAMPTKRPDQNKAPKEDRSELGKFDASKPLTKRLNSGMYLLDADSERRLMDLMKNVSSSITLEDVIRKHKVPSTHAYSLKNVVDKTIKMGKLEGSVVAVRAALLKLEEGCCIEDAEAVCEPEVLNHIFKWKNKLKVYLAPFLYGMRYSSFGRHFTKVEKLVEIVDRLHWYIEKGDTIVDFCCGANDFSVLMKKKLDEIGKRCSYRNFDFIPPKNDFNFEKRDWMTVQPKELPKGSQLIMGLNPPFGVKAALANKFIDKALEFNPKLLILIVPPETERLDRKKTPYDLVWEDNEFLSGKSFYLPGSVNAKDKQMDQWNVRPPVLYLWSRRDWTDKHTAIAREHEHLSPRKQEESEKGKTADTSRVKQPEESEKGKSSDLSRLRQQEDSGMGKGSDVPRPKQLESEKGQSSKTSADDIHLHETFLMKESTILAADEPEDSKSGSIVSEVHKNGSTKTSKRDSDRESHDSRDVRPNLSPEAPRKKRQRFEEIPRRGDGETSEESRRDGKRPLNEINQRPHASPNVSDHISYKSVERPSYADAGGIERQQSGLTMPDPNTNFGAPYDAQTSLTDDIARKYNLNAEESFSIGTTGWSNNASPIYDIGSRHIEEQRNVDQMGGHVDGLNYKPYATGVGTYMRDSEIRPHIRHYGHPDTDNLRSNYQTGPDPRYSRIGAFPSTYGHLSTFPEPSHWMNTSATQRYAPRLDELNHTRLGGMGAGHQMNGSSTFDPRERLSSGFRGAPQGFAPGPQYPYSNQNSAGWLNE 1313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46359658 46400668 - XM_039042883.1 Bhi09g01710 44327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01710 1313 MobiDBLite consensus disorder prediction 892 1080 - -
Bhi09g01710 1313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 282 IPR013083 -
Bhi09g01710 1313 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1 1308 - -
Bhi09g01710 1313 SMART PHD_3 228 280 IPR001965 -
Bhi09g01710 1313 SMART PHD_3 352 418 IPR001965 -
Bhi09g01710 1313 SMART PHD_3 285 351 IPR001965 -
Bhi09g01710 1313 MobiDBLite consensus disorder prediction 1270 1313 - -
Bhi09g01710 1313 MobiDBLite consensus disorder prediction 1066 1080 - -
Bhi09g01710 1313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 400 IPR013083 -
Bhi09g01710 1313 MobiDBLite consensus disorder prediction 1298 1313 - -
Bhi09g01710 1313 MobiDBLite consensus disorder prediction 892 933 - -
Bhi09g01710 1313 CDD PHD3_NSD 352 384 - -
Bhi09g01710 1313 MobiDBLite consensus disorder prediction 561 575 - -
Bhi09g01710 1313 MobiDBLite consensus disorder prediction 949 974 - -
Bhi09g01710 1313 Pfam Cytosine specific DNA methyltransferase replication foci domain 14 137 IPR022702 -
Bhi09g01710 1313 MobiDBLite consensus disorder prediction 1003 1063 - -
Bhi09g01710 1313 SUPERFAMILY FYVE/PHD zinc finger 213 283 IPR011011 -
Bhi09g01710 1313 MobiDBLite consensus disorder prediction 551 575 - -
Bhi09g01710 1313 CDD PHD2_NSD 285 350 - -
Bhi09g01710 1313 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 1308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01710 - - - cmos:111445988 1817.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g01710 Bhi-Chr9:46359658 Bhi09g01712 Bhi-Chr9:46359658 0 dispersed
Bhi09g01710 Bhi-Chr9:46359658 Bhi09g01711 Bhi-Chr9:46359658 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g591 Blo03g00537 . Bda07g00383 . . . . . . . Cma01g01105 . Car01g00978 . . . Cpe02g00796 Bhi09g01710 . . . . . . . . . . . . . . . Cone14ag1189 Cone15ag1208 Lsi02g01869 Csa07g00996 . . . . . . Bpe11g00561 . . . . Cmo01g01151 . . . . . . . . . . . . . . Cla09g02036 Cam09g2125 Cec09g2190 . . . . . . Chy01g01070 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003000 1 4 2 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 10 1 1 1 1 1 1 3 1 2 46